View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1946_high_146 (Length: 226)
Name: NF1946_high_146
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_high_146 |
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| [»] chr4 (1 HSPs) |
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| [»] scaffold0392 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 56067886 - 56068111
Alignment:
| Q |
1 |
caagaaaggcttcttcccatagcaaacgtgggtaggatcatgaagaaagcgttaccggcgagagcaaagatatcgaaagaagctaaagaaacgatgcaag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
56067886 |
caagaaaggcttcttcccatagcaaacgtgggtaggatcatgaagaaagcgttaccgacgagagcaaagatatcgaaagaagctaaagaaacgatgcaag |
56067985 |
T |
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| Q |
101 |
agtgtgtatcagagttcataagcttcataacaggtgaagcatctgaaaagtgtcagaaagagaagaggaagacaataaacggtgatgatcttgtgtgggc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56067986 |
agtgtgtatcagagttcataagcttcataacaggtgaagcatctgaaaagtgtcagaaagagaagaggaagacaataaacggtgatgatcttgtgtgggc |
56068085 |
T |
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| Q |
201 |
catgactacacttggctttgaagaat |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
56068086 |
catgactacacttggctttgaagaat |
56068111 |
T |
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Target: chr2 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 9722624 - 9722847
Alignment:
| Q |
1 |
caagaaaggcttcttcccatagcaaacgtgggtaggatcatgaagaaagcgttaccggcgagagcaaagatatcgaaagaagctaaagaaacgatgcaag |
100 |
Q |
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||||| ||| ||||||| |||||||||||| ||||||||||||| || || ||||| || | |||||||| || |||||||| |||||||| | |||| |
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| T |
9722624 |
caagataggtttcttccaatagcaaacgtgagtaggatcatgaaaaaggctttaccagcaaacgcaaagatctcaaaagaagcaaaagaaacagtacaag |
9722723 |
T |
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| Q |
101 |
agtgtgtatcagagttcataagcttcataacaggtgaagcatctgaaaagtgtcagaaagagaagaggaagacaataaacggtgatgatcttgtgtgggc |
200 |
Q |
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| T |
9722724 |
agtgtgtatcagagtttatcagtttcataactggagaagcttctgataagtgtcagaaagagaagaggaaaacaatcaacggtgatgatcttctttgggc |
9722823 |
T |
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| Q |
201 |
catgactacacttggctttgaaga |
224 |
Q |
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| T |
9722824 |
tatgacaactcttggatttgaaga |
9722847 |
T |
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Target: chr8 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 76 - 222
Target Start/End: Original strand, 38281641 - 38281787
Alignment:
| Q |
76 |
aaagaagctaaagaaacgatgcaagagtgtgtatcagagttcataagcttcataacaggtgaagcatctgaaaagtgtcagaaagagaagaggaagacaa |
175 |
Q |
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| T |
38281641 |
aaagaagcaaaagaaacggttcaagaatgtgtctctgagttcattagtttcattactggtgaagcttctgataagtgtcagagagaaaaaaggaaaacaa |
38281740 |
T |
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| Q |
176 |
taaacggtgatgatcttgtgtgggccatgactacacttggctttgaa |
222 |
Q |
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| T |
38281741 |
ttaatggtgatgatcttctttgggctatgacaacacttggttttgaa |
38281787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 209
Target Start/End: Original strand, 41866545 - 41866735
Alignment:
| Q |
19 |
atagcaaacgtgggtaggatcatgaagaaagcgttaccggcgagagcaaagatatcgaaagaagctaaagaaacgatgcaagagtgtgtatcagagttca |
118 |
Q |
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| T |
41866545 |
atagcaaacgtgagcagaataatgaagaaggcgttaccagcaaacgcgaagatctcgaaagatgctaaggaaacggtgcaggaatgtgtatcggagttca |
41866644 |
T |
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| Q |
119 |
taagcttcataacaggtgaagcatctgaaaagtgtcagaaagagaagaggaagacaataaacggtgatgatcttgtgtgggccatgactac |
209 |
Q |
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| T |
41866645 |
tcagcttcatcaccggtgaagcttccgataagtgtcagagagagaaacgaaagacgatcaacggcgacgatctactttgggcgatgactac |
41866735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 64 - 189
Target Start/End: Complemental strand, 39786450 - 39786325
Alignment:
| Q |
64 |
gcaaagatatcgaaagaagctaaagaaacgatgcaagagtgtgtatcagagttcataagcttcataacaggtgaagcatctgaaaagtgtcagaaagaga |
163 |
Q |
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||||| || |||||||| ||||||||||| |||||||||||||| |||||||| | || || |||| |||||||||||||| |||||||| || |||| |
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| T |
39786450 |
gcaaaaatctcgaaagatgctaaagaaaccatgcaagagtgtgtctcagagtttgttagttttgtaactggtgaagcatctgacaagtgtcacaaggaga |
39786351 |
T |
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| Q |
164 |
agaggaagacaataaacggtgatgat |
189 |
Q |
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| T |
39786350 |
agcgcaagacagtgaatggtgatgat |
39786325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 189
Target Start/End: Original strand, 23569695 - 23569873
Alignment:
| Q |
11 |
ttcttcccatagcaaacgtgggtaggatcatgaagaaagcgttaccggcgagagcaaagatatcgaaagaagctaaagaaacgatgcaagagtgtgtatc |
110 |
Q |
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||||||| ||||||||||| | ||||||||||| ||||| |||| |||| || ||||| || ||||| || || ||||| | ||||||||||| || |
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| T |
23569695 |
ttcttccaatagcaaacgtaagcaggatcatgaaaaaagcactaccagcgaacgcgaagatctcaaaagacgcaaaggaaacagttcaagagtgtgtttc |
23569794 |
T |
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| Q |
111 |
agagttcataagcttcataacaggtgaagcatctgaaaagtgtcagaaagagaagaggaagacaataaacggtgatgat |
189 |
Q |
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| T |
23569795 |
agagttcatcagcttcatcaccggcgaagcctccgataagtgtcaacgtgagaagcggaagacgatcaacggcgatgat |
23569873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 189
Target Start/End: Original strand, 22139957 - 22140004
Alignment:
| Q |
142 |
tctgaaaagtgtcagaaagagaagaggaagacaataaacggtgatgat |
189 |
Q |
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| T |
22139957 |
tctgataagtgtcagagagagaagaggaagacgattaacggtgatgat |
22140004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 189
Target Start/End: Original strand, 40539347 - 40539394
Alignment:
| Q |
142 |
tctgaaaagtgtcagaaagagaagaggaagacaataaacggtgatgat |
189 |
Q |
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| T |
40539347 |
tctgataagtgtcagagagagaagaggaagacgattaacggtgatgat |
40539394 |
T |
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Target: scaffold0392 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0392
Description:
Target: scaffold0392; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 143
Target Start/End: Complemental strand, 14812 - 14740
Alignment:
| Q |
71 |
tatcgaaagaagctaaagaaacgatgcaagagtgtgtatcagagttcataagcttcataacaggtgaagcatc |
143 |
Q |
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| T |
14812 |
tatcgaaggaagcaaaggaaacaatgcaagaatgtgtgtccgagttcataagcttcgtgacgagtgaagcatc |
14740 |
T |
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