View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1946_high_155 (Length: 207)
Name: NF1946_high_155
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_high_155 |
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Alignment Details
Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 23 - 192
Target Start/End: Original strand, 36760507 - 36760676
Alignment:
| Q |
23 |
tgatagagaaaacacatatgttgtctagtgagataacaagtattcctaatttagaattagctgtgaataagtcaatttggttggttaacaaaagaccaaa |
122 |
Q |
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| T |
36760507 |
tgatagagaaaacacatatgttgtctagtgagataacaaatatttctaatttagaattagctgtgaataagtcaatttggttggttaacaaaagaccaaa |
36760606 |
T |
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| Q |
123 |
atgttcaaagttcaaccaagtgttcaattttgaggatgttaaggttgtgcaacatggttcattgcctatg |
192 |
Q |
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| T |
36760607 |
atgttcaaagttcaaccaagtgttcaattttgaggatgttaaggttgtgcaacatggttcattgcctatg |
36760676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 23 - 183
Target Start/End: Original strand, 36788506 - 36788669
Alignment:
| Q |
23 |
tgatagagaaaacacatatgttgtctagtgagataacaagtattcctaatttagaattagct---gtgaataagtcaatttggttggttaacaaaagacc |
119 |
Q |
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| T |
36788506 |
tgatagagaaaacgcaaattttgtctagtgaaattacaaatgttcatagtttggaattaacgtcggtgaataagacaattgggttagttaacaagagacc |
36788605 |
T |
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| Q |
120 |
aaaatgttcaaagttcaaccaagtgttcaattttgaggatgttaaggttgtgcaacatggttca |
183 |
Q |
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| T |
36788606 |
aaaacgttcaaagttcaaccaagtgtccaattttgatgatggtaatattgtgcaacatggttca |
36788669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 72 - 188
Target Start/End: Original strand, 36796935 - 36797054
Alignment:
| Q |
72 |
tttagaattagctgtgaataagtcaatttggttggttaacaaaagaccaaaatgttca---aagttcaaccaagtgttcaattttgaggatgttaaggtt |
168 |
Q |
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| T |
36796935 |
tttagaattagtggtgaataaggcaattggattatttaacaagagtccaaaatggtcggagaagttcaacaaggtgattaattttgaggatgttaaggtt |
36797034 |
T |
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| Q |
169 |
gtgcaacatggttcattgcc |
188 |
Q |
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| T |
36797035 |
gttcaacatggttcattgcc |
36797054 |
T |
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