View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1946_high_16 (Length: 515)
Name: NF1946_high_16
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 10 - 499
Target Start/End: Complemental strand, 38330644 - 38330156
Alignment:
| Q |
10 |
aagaatatgtgacggttattgtgggatgaagagaatataagatgatgatcgatgactatgcatatagatatgtactgatgctcctaggtaagagttcaat |
109 |
Q |
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| T |
38330644 |
aagaaaatgtgacggttattgtgggatgaagagaatataagatgatgatcgatgactatgcatatagatatgtactgatgctcctaggtaagagttcaat |
38330545 |
T |
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| Q |
110 |
attaattgacttttccttataaaagcagcaaaaggtgaagctaagtagaatttgaatgatatattggaggtcacatcctactttgttcatgcttttcaat |
209 |
Q |
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| T |
38330544 |
attaattgacttttccttataaaagcagcaaaaggtgaagctaagtagaatttgaatgatatattggaggtcacatcctactttgttcatgcttttcaat |
38330445 |
T |
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| Q |
210 |
tcaatctgaagaaaaattcatcacaatagtgcgaacagaataaaaaataatctaagtcaactcgtttattggattggaagtgctcaaaacatggcgcata |
309 |
Q |
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| T |
38330444 |
tcaatctaaagaaaaattcatcacaatagtgcgaacagaataaaaaataatc-aagtcaactcatttattggattggaagtgctcaaaacatggcgcata |
38330346 |
T |
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| Q |
310 |
atgaaaatagaaacaagagtttacgtgtttatcacgaacttaacattatatataatggtgtaaatgttatatcatacgttaatgtatcacaaatcataat |
409 |
Q |
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| T |
38330345 |
atgaaaatagaaacaagagtttacgtgtttatcacgaacttaacattatatataatggtgtaaatgttatatcatacgttaatgtatcacaaatcataat |
38330246 |
T |
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| Q |
410 |
gaatatttaaaattatccatctacttcacatttcggcgtactttgttattgtgatattatcatattatgatgattagtgatattaaaatt |
499 |
Q |
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| T |
38330245 |
gaatatttaaaattatccatctacttcacatttcggcgtactttgttattgtgatattatcatattatgatgattagtgatattaaaatt |
38330156 |
T |
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