View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1946_high_17 (Length: 500)
Name: NF1946_high_17
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_high_17 |
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Alignment Details
Target: chr8 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 23 - 439
Target Start/End: Complemental strand, 7760630 - 7760214
Alignment:
| Q |
23 |
aagtatggtcatctgaaatctagaagtagagggcaggccaaaataacataagaacagaaaagttctgccaagttattaaaagttgagatatattctgcca |
122 |
Q |
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| T |
7760630 |
aagtatggtcatctgaaatctagaagtagagggcaggccaaaataacataagaacagaaaagttctgccaagttattaaaagttgagatatattctgcca |
7760531 |
T |
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| Q |
123 |
agttattctagtggatctatttttagaagatt--tatgtgtaaataaatttgacaacattcttaacacaatttatgaattttctgtaattgatgaaagac |
220 |
Q |
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| T |
7760530 |
agttattctagtggatctatttttagaagatttatatgtgtaaataaatttgccaacattcttaacataatttatgaattttctgtaattgatgaaagac |
7760431 |
T |
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| Q |
221 |
atccaaaggcaggttttgnnnnnnncaaaggtgaagtgtttattattatccgatccaacccgtgggtggttaacaatggttcaatattgatcgattttct |
320 |
Q |
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| T |
7760430 |
ctccaaaggcaggttttg-ttttttcaaaggtgaagtgctta-tattatccgatccaacccgcgggtggttaacaatggttcaatattgatcaattttct |
7760333 |
T |
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| Q |
321 |
aaatggtttggtcgggttttgggttgtcactttgataggaacggtataatgggttgtttacttccacctttcttaagtatgtgtatgcactcaaatagtg |
420 |
Q |
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|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
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| T |
7760332 |
aaatagtttggtcgggttttaggttgtcactttgataggaacggtataatgggttgtctatttccacctttcttaagtatgtgtatgcactcaaatagtg |
7760233 |
T |
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| Q |
421 |
tgcataaatatttgtgact |
439 |
Q |
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| T |
7760232 |
tgcataaatatttgtgact |
7760214 |
T |
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