View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1946_high_2 (Length: 779)
Name: NF1946_high_2
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 561; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 1 - 752
Target Start/End: Complemental strand, 1562383 - 1561617
Alignment:
| Q |
1 |
gtgctcagattctagactcaaa-gtaaacttatgcactacatttatctttgctgaattcatattaaagagcaaaataaaaacaaaatagatcaaactgtt |
99 |
Q |
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| T |
1562383 |
gtgctcacattctagactcaaaagtaaacttatgcactacatttatctttgctgaattcatattaaagagcaaaataaaaacaaaatagatcaaactgtt |
1562284 |
T |
|
| Q |
100 |
aatgatggaaactttaaatcaaaagactcgtagcaaatacatatgaattaaaagggaaaaggacaccttaaacacagcatacagtgaacataaagggaca |
199 |
Q |
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| T |
1562283 |
aatgatggaaactttaaatcaaaagactcgtagcaaatacatatgaattaaaaggtaaaaggacaccttaaacacagcctacagagaacataaagggaca |
1562184 |
T |
|
| Q |
200 |
gcaaccacacgagtacaacaacaatattgagagattgattttcatcttaaattaacgtagcagcaattgaattcataggaggcaaattggaattaaagat |
299 |
Q |
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| T |
1562183 |
gcaaccacacgagtacaacaacaatattgagagattgattttcatcttaaattaacgtagcagcaattgaattcataggaggcaaattggaattaaagat |
1562084 |
T |
|
| Q |
300 |
ttagagctt--------------gtataccctcttttttggttgaaattaagaacttgtttgaattaatttatttgagtttatctattaatataaacacg |
385 |
Q |
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| T |
1562083 |
ttagagcttgttttttggttgcagtataccctcttttttggttgaaattaagaatttgtttggattaatttatttgagtttatctattaatataaacaca |
1561984 |
T |
|
| Q |
386 |
ggagagaatttagaagagcttatggaatttgtacccnnnnnnnngtgcttatagaacattttacgacatgttcataaagtatttttagttgattttcata |
485 |
Q |
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| T |
1561983 |
tgagagaatttaaaagagcttatggaatttgtacccaaaaaaaagtgcttatagaacattttatgacatgttcataaagtatttttagttggttttcata |
1561884 |
T |
|
| Q |
486 |
accctttttggaatagcttatgaaaactacttataacctatatagaaaagtttgactttttgttattgaaataacttatacacaaatatttatatgataa |
585 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
1561883 |
accctttttggaatagcttatgaaaactacttataatctatatagaaaagtttgagtttttgttattgaaataacttatacacaaatgtttatatgataa |
1561784 |
T |
|
| Q |
586 |
acttaatgttatgagtgtttagttacattgttaatttctgggtcttagcttttttgggtgttaaacctccagct-ttcaatgaagggaccccttattaat |
684 |
Q |
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|||||||||||| || |||||||||||||||||||||||| |||| | ||||||||||||| ||| ||||| | || || ||||||||||||||||||| |
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| T |
1561783 |
acttaatgttataagcgtttagttacattgttaatttctgattcttcgtttttttgggtgttcaacttccagttcttaaaggaagggaccccttattaat |
1561684 |
T |
|
| Q |
685 |
ccaaattttgtccgagagataattaaagtcaggcaggaaaaaatttcatccagaaaacaggtcttagt |
752 |
Q |
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|
| T |
1561683 |
ccgaattttgtccgagagataa-taaagtcaggtaggaaaaaatttcatccagaaaacaggttttagt |
1561617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 215 - 280
Target Start/End: Original strand, 17361540 - 17361605
Alignment:
| Q |
215 |
caacaacaatattgagagattgattttcatcttaaattaacgtagcagcaattgaattcataggag |
280 |
Q |
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| T |
17361540 |
caacaacaatatttagagattgattttgatcttgaattaacgtagcagcaattgaattcataggag |
17361605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 543 - 587
Target Start/End: Complemental strand, 49517036 - 49516991
Alignment:
| Q |
543 |
ttttgttattgaaataacttatacacaaa-tatttatatgataaac |
587 |
Q |
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| T |
49517036 |
ttttgttatagaaataacttatacacaaacaatttatatgataaac |
49516991 |
T |
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