View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1946_high_20 (Length: 488)

Name: NF1946_high_20
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1946_high_20
NF1946_high_20
[»] chr7 (3 HSPs)
chr7 (19-473)||(43200179-43200652)
chr7 (249-308)||(39104097-39104155)
chr7 (250-290)||(10484333-10484373)
[»] chr4 (2 HSPs)
chr4 (250-300)||(40745249-40745299)
chr4 (260-299)||(36066501-36066540)
[»] chr6 (2 HSPs)
chr6 (249-300)||(14609063-14609114)
chr6 (250-290)||(14580118-14580158)
[»] chr5 (1 HSPs)
chr5 (266-301)||(36576394-36576429)
[»] chr3 (1 HSPs)
chr3 (266-299)||(41872426-41872459)
[»] chr1 (1 HSPs)
chr1 (247-300)||(49275486-49275539)


Alignment Details
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 19 - 473
Target Start/End: Original strand, 43200179 - 43200652
Alignment:
Q  19 tcatccactttaaacctcttgttttggatgcagaatatgcatgtgttggataaccaaataaagcatataagaattctttacatacatattacaaa-tatc 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| | ||    
T  43200179 tcatccactttaaacctcttgttttggatgcagaatatgcatgtgttggataaccaaatatagcatataagaattctttgcatacatattacaaaatgtc 43200278  T
Q  118 atgtcgtttgttcactaaaatgtcgatagaagggtttattttatnnnnnnnttagggtaaaacagcgta----gcataaaaaattgtggaattccttcac 213  Q
    ||||||||||||||||||||||  ||||||||||||||||| ||       ||||||||||||||| ||    ||||||||||| |||||||||||||||    
T  43200279 atgtcgtttgttcactaaaatgcggatagaagggtttatttcataagaaaattagggtaaaacagcatacaatgcataaaaaatagtggaattccttcac 43200378  T
Q  214 aaattagtctaaggataaggttactacaatcatcactttaggtctcccaacaaaaaattatttttcattatattttataaacaaaaattcctcatttacg 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43200379 aaattagtctaaggataaggttactacaatcatcactttaggtctcccaacaaaaaattatttttcattatattttataaacaaaaattcctcatttacg 43200478  T
Q  314 gactnnnnnnntctcatatattaaaatttgttttaaatctcatatattaggccaaccctattccagacccctacatgcacaccaaac------------- 400  Q
    ||||       |||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||                 
T  43200479 gactaaaaaaatctcatatattaaaatttattttaaatctcgtatattaggccaatcctattccagacccctacatgcacaccaaactgccttttttaaa 43200578  T
Q  401 -tgccgttttcatttactttgaagaacgaggttgagcatcttttaattttgaagatacttctgattatgcgcat 473  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43200579 ttgccgttttcatttactttgaagaacgaggttgagcatcttttaattttgaagatacttctgattatgcgcat 43200652  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 249 - 308
Target Start/End: Complemental strand, 39104155 - 39104097
Alignment:
Q  249 ctttaggtctcccaacaaaaaattatttttcattatattttataaacaaaaattcctcat 308  Q
    ||||||| || |||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  39104155 ctttaggcctaccaacaaaaaat-atttttcattatattttataaacaaaaatgcctcat 39104097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 250 - 290
Target Start/End: Complemental strand, 10484373 - 10484333
Alignment:
Q  250 tttaggtctcccaacaaaaaattatttttcattatatttta 290  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  10484373 tttaggcctcccaacaaaaaattatttttcattatatttta 10484333  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 250 - 300
Target Start/End: Original strand, 40745249 - 40745299
Alignment:
Q  250 tttaggtctcccaacaaaaaattatttttcattatattttataaacaaaaa 300  Q
    |||||| || ||||||||||| |||||||||||| ||||||||||||||||    
T  40745249 tttaggccttccaacaaaaaaatatttttcattagattttataaacaaaaa 40745299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 260 - 299
Target Start/End: Original strand, 36066501 - 36066540
Alignment:
Q  260 ccaacaaaaaattatttttcattatattttataaacaaaa 299  Q
    |||||||||||| ||||||||||| |||||||||||||||    
T  36066501 ccaacaaaaaatcatttttcattagattttataaacaaaa 36066540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 249 - 300
Target Start/End: Complemental strand, 14609114 - 14609063
Alignment:
Q  249 ctttaggtctcccaacaaaaaattatttttcattatattttataaacaaaaa 300  Q
    |||||| ||||||||||||||||||||||| |||| |||||| || ||||||    
T  14609114 ctttagatctcccaacaaaaaattattttttattagattttacaagcaaaaa 14609063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 250 - 290
Target Start/End: Complemental strand, 14580158 - 14580118
Alignment:
Q  250 tttaggtctcccaacaaaaaattatttttcattatatttta 290  Q
    |||||||||||||||||||||| |||||| |||| ||||||    
T  14580158 tttaggtctcccaacaaaaaataattttttattaaatttta 14580118  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 301
Target Start/End: Original strand, 36576394 - 36576429
Alignment:
Q  266 aaaaattatttttcattatattttataaacaaaaat 301  Q
    ||||| ||||||||||||||||||||||||||||||    
T  36576394 aaaaaatatttttcattatattttataaacaaaaat 36576429  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 299
Target Start/End: Complemental strand, 41872459 - 41872426
Alignment:
Q  266 aaaaattatttttcattatattttataaacaaaa 299  Q
    |||||||||||||||||| |||||||||||||||    
T  41872459 aaaaattatttttcattaaattttataaacaaaa 41872426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 300
Target Start/End: Complemental strand, 49275539 - 49275486
Alignment:
Q  247 cactttaggtctcccaacaaaaaattatttttcattatattttataaacaaaaa 300  Q
    ||||||||||| ||||| | ||||||||||||||||| |||||| || ||||||    
T  49275539 cactttaggtcccccaagagaaaattatttttcattagattttacaagcaaaaa 49275486  T

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