View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1946_high_23 (Length: 478)
Name: NF1946_high_23
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 18 - 465
Target Start/End: Original strand, 54180803 - 54181250
Alignment:
| Q |
18 |
gttgcataccaattcttctttgatagcaccttcttttttgattcctcaataatcttaggtcctaaacctaagtttgataagtaaagacacaaatcttccc |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54180803 |
gttgcataccaattcttctttgatagcaccttcttttttgattcctcaataatcttaggtcctaaacctaagtttgataagtaaagacacaaatcttccc |
54180902 |
T |
|
| Q |
118 |
acttcaagagagtgtgacaccttttcaacaaatccttattgaacctactaggaagatcataaacgtaaatatatcggcctaaacaaggatcgagaattgt |
217 |
Q |
| |
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|||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54180903 |
acttcaagagagtgtggcatcttttcaacaaatccttattgaacctactaggaagatcataaacgtaaatatatcggcctaaacaaggatcgagaattgt |
54181002 |
T |
|
| Q |
218 |
tggggacagcttcgtaaatacttcatcgacattctcttcaatcaaaggaggggaaactatgggtgcatatgtggctccaatattggtaacattgttttga |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54181003 |
tggggacagcttcgtaaatacttcatcgacattctcttcaatcaaaggaggggaaactatgggtgcatatgtggctccaatattggtaacattgttttga |
54181102 |
T |
|
| Q |
318 |
ttagtagtagtggtacaacaaatagtttcatcaagatgggaagaaaaatttgagggtgtagtagctatttcttcaaaacgctttgcattattcatgttag |
417 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54181103 |
ttagtagtagtggtacaacaaatagtttcatcaaaatgggaagaaaaatttgagggtgtagtagctatttcttcaaaacgctttgcattattcatgttag |
54181202 |
T |
|
| Q |
418 |
gaaataagaatgtgatttcactatcattgctagccaaataagaataat |
465 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54181203 |
gaaataagaatgtgatttcactatcattgctagccaaataagaataat |
54181250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 95; Significance: 3e-46; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 18 - 208
Target Start/End: Complemental strand, 41947840 - 41947650
Alignment:
| Q |
18 |
gttgcataccaattcttctttgatagcaccttcttttttgattcctcaataatcttaggtcctaaacctaagtttgataagtaaagacacaaatcttccc |
117 |
Q |
| |
|
|||||||||||||| |||||||||||||| | |||||||||| |||||||||||||||||||| |||||||||||||||| ||| ||||| || ||||| |
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| T |
41947840 |
gttgcataccaatttttctttgatagcacttctttttttgatttctcaataatcttaggtcctacacctaagtttgataagaaaacacacatattttccc |
41947741 |
T |
|
| Q |
118 |
acttcaagagagtgtgacaccttttcaacaaatccttattgaacctactaggaagatcataaacgtaaatatatcggcctaaacaaggatc |
208 |
Q |
| |
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||||| |||| ||| || | |||||||||||||| |||||| ||| ||||||||||||||| || |||||| |||||||||||||||| |
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| T |
41947740 |
acttctgtagagagtggcatcctttcaacaaatcctcattgaatctagcaggaagatcataaacatagatatattggcctaaacaaggatc |
41947650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 18 - 266
Target Start/End: Complemental strand, 41942326 - 41942078
Alignment:
| Q |
18 |
gttgcataccaattcttctttgatagcaccttcttttttgattcctcaataatcttaggtcctaaacctaagtttgataagtaaagacacaaatcttccc |
117 |
Q |
| |
|
|||||||||||| |||||||||||||||| || || |||| || |||||||||||||||||||| |||||||||||||| ||||| ||||| || ||||| |
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| T |
41942326 |
gttgcataccaactcttctttgatagcacttttttctttgttttctcaataatcttaggtcctacacctaagtttgataggtaaacacacatattttccc |
41942227 |
T |
|
| Q |
118 |
acttcaagagagtgtgacaccttttcaacaaatccttattgaacctactaggaagatcataaacgtaaatatatcggcctaaacaaggatcgagaattgt |
217 |
Q |
| |
|
||||| |||| ||| || | |||||||||||||| |||||| ||| ||||||||||||||| || ||||| | |||||||||||||| | |||| | |
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| T |
41942226 |
acttctgtagagagtggcatcctttcaacaaatcctcattgaatctagcaggaagatcataaacatagatatactgacctaaacaaggatccataatttt |
41942127 |
T |
|
| Q |
218 |
tggggacagcttcgtaaatacttcatcgacattctcttcaatcaaagga |
266 |
Q |
| |
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||| | || ||| ||||||||||||| ||||| | || |||||||||| |
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|
| T |
41942126 |
tggcggcaactttttaaatacttcatcaacattgtgtttaatcaaagga |
41942078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 54 - 205
Target Start/End: Complemental strand, 22794304 - 22794153
Alignment:
| Q |
54 |
tttgattcctcaataatcttaggtcctaaacctaagtttgataagtaaagacacaaatcttcccacttcaagagagtgtgacaccttttcaacaaatcct |
153 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||||||||||||| |||||| || ||||||||| | ||| |||| || | ||||||||| || | |
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| T |
22794304 |
tttgattcctcaataatcttaggccctaatcctaagtttgataagtaaggacacatattttcccacttaatgagtgtgttgcatcctttcaacaagtcat |
22794205 |
T |
|
| Q |
154 |
tattgaacctactaggaagatcataaacgtaaatatatcggcctaaacaagg |
205 |
Q |
| |
|
|||||| | ||||||||||||||| || || |||||| ||||||||||||| |
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| T |
22794204 |
cattgaatcgactaggaagatcatagacatatatatattggcctaaacaagg |
22794153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 397 - 458
Target Start/End: Complemental strand, 41947608 - 41947547
Alignment:
| Q |
397 |
gctttgcattattcatgttaggaaataagaatgtgatttcactatcattgctagccaaataa |
458 |
Q |
| |
|
|||||||||| |||||||||| || ||||||||| ||| |||||| |||||||||||||||| |
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|
| T |
41947608 |
gctttgcattgttcatgttagaaagtaagaatgtcattccactattattgctagccaaataa |
41947547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 208
Target Start/End: Complemental strand, 1210594 - 1210404
Alignment:
| Q |
18 |
gttgcataccaattcttctttgatagcaccttcttt-tttgattcctcaataatcttaggtcctaaacctaagtttgataagtaaagacacaaatcttcc |
116 |
Q |
| |
|
|||||||||||| | ||||||||||| || |||||| ||||||| ||||||||||| | |||||| ||||||||||||||| ||| ||||| || |||| |
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|
| T |
1210594 |
gttgcataccaactattctttgatagaac-ttctttctttgatttctcaataatctcaagtcctacgcctaagtttgataagaaaacacacatattttcc |
1210496 |
T |
|
| Q |
117 |
cacttcaagagagtgtgacaccttttcaacaaatccttattgaacctactaggaagatcataaacgtaaatatatcggcctaaacaaggatc |
208 |
Q |
| |
|
|||||| |||| ||| || | ||||||||||||| |||||| ||| |||||||||||||| || |||||| ||| |||||||||||| |
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|
| T |
1210495 |
cacttctgtagagagtggcatcctttcaacaaatccacattgaatctagcaggaagatcataaatatagatatattggcttaaacaaggatc |
1210404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 397 - 458
Target Start/End: Complemental strand, 1210362 - 1210301
Alignment:
| Q |
397 |
gctttgcattattcatgttaggaaataagaatgtgatttcactatcattgctagccaaataa |
458 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||| ||| |||||| |||||||||||||||| |
|
|
| T |
1210362 |
gctttgcattgttcatgttaggaagtaagaatgccattccactattattgctagccaaataa |
1210301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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