View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1946_high_25 (Length: 460)
Name: NF1946_high_25
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_high_25 |
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Alignment Details
Target: chr2 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 241 - 391
Target Start/End: Original strand, 40122451 - 40122601
Alignment:
| Q |
241 |
gagaggacaaagcatgtaagatgataagtaaaaatttcaaatttgagtgggtgcatgtgatcacagtagacctaacatgggtttgcccctgatcattatt |
340 |
Q |
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| T |
40122451 |
gagaggacaaagcatgtaagatgataagtgaaaatttcaaatttgagtgggtgcatgtgatcacagtagacctaacatgggtttgcccctgatcattatt |
40122550 |
T |
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| Q |
341 |
attagccatagtctacaagcatcaatagagttaatgattttgaacgttaag |
391 |
Q |
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| T |
40122551 |
attagccatagtctacaagcatcaatagagttaatgattttgaacgttaag |
40122601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 13 - 218
Target Start/End: Original strand, 40122221 - 40122426
Alignment:
| Q |
13 |
aatatatattggtatatattatgatcaaatatttttggcaaataagctaatattatagtgtgcaatactgtttctattgtagtggggtaattcatatttt |
112 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||| |
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| T |
40122221 |
aatatatattggtatatactatgatcaaatatttttggcaaataagctaatattatagtgttcaatactgtttatattgtagtgggataattcatatttt |
40122320 |
T |
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| Q |
113 |
aatgaaatgtaactattatttttaatgaatggtnnnnnnnnnnnnnnnnncccaaccaaatacctatacaaaatatatttcctataatattatacaaagc |
212 |
Q |
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| T |
40122321 |
aatgaaatgtaactattatttttaatgaatggtaaaaatgaaataaaaaacccaaccaaatacctatacaaaatatatttcctataatattatacaaagc |
40122420 |
T |
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| Q |
213 |
atgtat |
218 |
Q |
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|||||| |
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| T |
40122421 |
atgtat |
40122426 |
T |
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