View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1946_high_30 (Length: 449)
Name: NF1946_high_30
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_high_30 |
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Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 11 - 431
Target Start/End: Complemental strand, 6685899 - 6685468
Alignment:
| Q |
11 |
cacagacggcgatattttttattttattgcattttcattattttcgtttnnnnnnnttatcgtaatttcagactaagaag---gtatatatactttttgc |
107 |
Q |
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| T |
6685899 |
cacagacggcgatattttttattttattacattttcattattttcgtttaaaaaaattatcgtaatttcagactaagaagaaggtatatatactttttgc |
6685800 |
T |
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| Q |
108 |
taaa--------gaatatgagatgaacttttttattgcatttctttaatatcagtttgcaggtcgttactttagttattaaatgtaatgttgaaaggtgt |
199 |
Q |
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| T |
6685799 |
taaattttacaagaatatgagataaacttttttattgcatttctttaatatcagtttgcaggtcgttactttagttattaaatgtaatgttgaaaggtgt |
6685700 |
T |
|
| Q |
200 |
tgcattgagtgggaggacattcacattgttatcacattagtcaaattggcatggaaccaaagaacatgtcaaacattagcattgaaaataaacacaacga |
299 |
Q |
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| T |
6685699 |
tgcattgagtgggaggacattcacattgttatgacattagtcaaattggcatggaaccaaagaacatgtc-aacattagcattgaaaataaacacaacga |
6685601 |
T |
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| Q |
300 |
acttacaaagcataatataaacagtt-cnnnnnnnnnnnnngatatatttaactctataaacattatcatatcatggaatattgattaattaaatgctag |
398 |
Q |
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|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6685600 |
acttacaaagcataatataaacagttccaaaaaaaaatatatatatatttaactctataaacattatcatatcatggaatattgattaattaaatgctag |
6685501 |
T |
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| Q |
399 |
attctagatgaatgtatatgtatcccttagcct |
431 |
Q |
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| T |
6685500 |
attctagatgaatgtatatgtatcccttagcct |
6685468 |
T |
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