View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1946_high_33 (Length: 443)
Name: NF1946_high_33
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_high_33 |
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Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 2 - 431
Target Start/End: Complemental strand, 40305316 - 40304882
Alignment:
| Q |
2 |
tggcgggtatgttctctttgggttggggtgtgggtg------gtgagacgtggaagttgaggaggagactattggcgtgggaggaaggacaggtggaggg |
95 |
Q |
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|||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
40305316 |
tggcaggtatgttctctttgggttggggtgtgggtgtgggtggtgaggcgtggaagttgaggaggagactattggcgtgggaggaagaacaggtggaggg |
40305217 |
T |
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| Q |
96 |
ggtgtagtgaactactaacttctannnnnnnnataggatggtatggaggctaggttggtttggcaattatatgcaaccaaatcttataccgttagatgcg |
195 |
Q |
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| T |
40305216 |
ggtgtagtgaactactaacttctattttttt-ataggatggtatggaggataggttggtttggcaattatattcagccaaatcttataccgttagatgcg |
40305118 |
T |
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| Q |
196 |
cttatcaattctcgacttcagagaacgacgacaatcttcctgttgatgctcacaaattatggatcaaatcggttattcttaaagttaatctctttgcttg |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
40305117 |
cttatcaattctcgacttcagagaacgacgacaatcttcctgttgattctcacaaattatggatcaaatcggttattcttaaagttaacctcttcacttg |
40305018 |
T |
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| Q |
296 |
gagtttatttcttaatcaaatccctactaaagttaatttgtttaagggaggtgtgtagcaggttaatgattaaacttgtacaaagggatgtggaatgaat |
395 |
Q |
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| T |
40305017 |
gagtttatttcttaatcaaatccctactaaagttaatttgtttaagggaggtgtgtagcaagttaatgattaaacttgtacaaagggatgtggaatgaat |
40304918 |
T |
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| Q |
396 |
gaagatgttgatcatctttttaccatatgcgatttt |
431 |
Q |
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| T |
40304917 |
gaagatgttgatcatctttttaccatatgcgatttt |
40304882 |
T |
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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 33743269 - 33743342
Alignment:
| Q |
9 |
tatgttctctttgggttggggtgtgggtggtgagacgtggaagttgaggaggagactattggcgtgggaggaag |
82 |
Q |
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| T |
33743269 |
tatgttatctttgggttggagcgtgggtggtgaggcgtgaaagtggatgaggagattattggtgtgggaggaag |
33743342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 42474476 - 42474415
Alignment:
| Q |
19 |
ttgggttggggtgtgggtggtgagacgtggaagttgaggaggagactattggcgtgggagga |
80 |
Q |
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| T |
42474476 |
ttgggttggggagtggatggtgaggcatggaagtggagaaggagactttttgcgtgggagga |
42474415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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