View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1946_high_39 (Length: 434)
Name: NF1946_high_39
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_high_39 |
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Alignment Details
Target: chr8 (Bit Score: 180; Significance: 5e-97; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 212 - 429
Target Start/End: Complemental strand, 17849890 - 17849674
Alignment:
| Q |
212 |
taagtatttataggcatccatttcccttaagaaaattagtgtaggatccgagccttatcctcgcgatgtgaggtaggtattgagcatcccttttagccaa |
311 |
Q |
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| T |
17849890 |
taagtatttataggcatccatttccctcaagaaaattagtgtaggatccgagccttatcctcgcgatgtgaggtaggtattgagcatcccttttagccaa |
17849791 |
T |
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| Q |
312 |
agggatcactttgatttccaaannnnnnnctcgtggtgcaggtctcatagccagtgatgcaatttaggtagaagtttacttcttcatttcctcattcctt |
411 |
Q |
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| T |
17849790 |
agggatcactttgatttccaaa-ttttttctcgtggtgcaggtctcatagccagtgatgcaatttaggtagaagtttacttcttcatttcctcattcctt |
17849692 |
T |
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| Q |
412 |
gctgtatttcttctcact |
429 |
Q |
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| T |
17849691 |
gttgcatttcttctcact |
17849674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 22 - 207
Target Start/End: Complemental strand, 17850340 - 17850157
Alignment:
| Q |
22 |
gagccctaactaatgaagatttatgaatgacaaagtaagtagtgattattattgttttatgtatgtacctatccgataattgaatggatgcattaggtca |
121 |
Q |
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| T |
17850340 |
gagccctaactaatgaagatttatgaatgacaaagtaagtagtgattattattgttttatgtatgtacctatctgataattgaatggttgcattaggtca |
17850241 |
T |
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| Q |
122 |
agacacaaagttatggataataatcatcaaggcctaaactgatttatgaacatcaatgaacgcattaaaaacattaacaataatat |
207 |
Q |
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| T |
17850240 |
agacacaaagttatgg--aataatcatcatggcctaaactgatttatgaacatcaatgaacacattaaaaacattaacaataatat |
17850157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 113 - 207
Target Start/End: Complemental strand, 17838302 - 17838208
Alignment:
| Q |
113 |
attaggtcaagacacaaagttatggataataatcatcaaggcctaaactgatttatgaacatcaatgaacgcattaaaaacattaacaataatat |
207 |
Q |
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| T |
17838302 |
attaggtcaagccaaaaagttatggttaataatcgacatgacctaaactgatttatgaacttcaatgaacgcataaaaaacattaacaataatat |
17838208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 17838807 - 17838757
Alignment:
| Q |
22 |
gagccctaactaatgaagatttatgaatgacaaagtaagtagtgattatta |
72 |
Q |
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| T |
17838807 |
gagccctaactaatgaaggtttatgaatgccaaagtaagtaataattatta |
17838757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 207
Target Start/End: Complemental strand, 31077818 - 31077709
Alignment:
| Q |
97 |
ataattgaatggatgcattaggtcaagacacaaagttatggataataatcatcaaggcctaaactgatttatgaacatcaatgaacgcattaaaaacatt |
196 |
Q |
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||||||||| |||| | ||||||||| ||||||||| || || |||| | | | |||||| |||||||||||||| |||||| ||| |||||||||| |
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| T |
31077818 |
ataattgaacggataaaataggtcaagtcacaaagttggggttagtaattgttatgacctaaattgatttatgaacatgaatgaatgca-taaaaacatt |
31077720 |
T |
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| Q |
197 |
aacaataatat |
207 |
Q |
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|| |||||||| |
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| T |
31077719 |
aagaataatat |
31077709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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