View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1946_high_4 (Length: 736)

Name: NF1946_high_4
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1946_high_4
NF1946_high_4
[»] chr1 (1 HSPs)
chr1 (11-718)||(5273664-5274374)


Alignment Details
Target: chr1 (Bit Score: 679; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 679; E-Value: 0
Query Start/End: Original strand, 11 - 718
Target Start/End: Complemental strand, 5274374 - 5273664
Alignment:
Q  11 gaagcaaaggttaatgaacttgttagtacaacatacaccacaaagagacaaagaccgttctccacggttgctatgtcggttttaaaaatacttataagaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5274374 gaagcaaaggttaatgaacttgttagtacaacatacaccacaaagagacaaagaccgttctccacggttgctatgtcggttttaaaaatacttataagaa 5274275  T
Q  111 tatttttcagattcatcccacgatgtat----acccaacctaattgtgacttcaaattttttattaacttaacacaattccttttaatttgtttattata 206  Q
    ||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5274274 tatttttcagattcatcccacgatgtatgtatacccaacctaattgtgacttcaaattttttattaacttaacacaattccttttaatttgtttattata 5274175  T
Q  207 tacatggagactcccacgttcgttgttcaaatttcataattaaacgcgcatgctaagctcgcactttttcttctaactcctaactatcactatcaccata 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5274174 tacatggagactcccacgttcgttgttcaaatttcataattaaacgcgcatgctaagctcgcactttttcttctaactcctaactatcactatcaccata 5274075  T
Q  307 atttaataaaaaatatttataattaatctaactaatgatcatctctcaatcattagacttagactccctacctcttgtttcaattctaaataagtgtaat 406  Q
    ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5274074 att-aatcaaaaatatttataattaatctaactaatgatcatctctcaatcattagacttagactccctacctcttgtttcaattctaaataagtgtaat 5273976  T
Q  407 taacaatgtttaaattaaaaccatattgaagaattatattattgtaaattatcatatcataaactttggtcccatatgagttgtcgtttgctttgtatat 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5273975 taacaatgtttaaattaaaaccatattgaagaattatattattgtaaattatcatatcataaactttggtcccatatgagttgtcgtttgctttgtatat 5273876  T
Q  507 ggtcactcagtggacttccctaagttttagttacatagaactaggacaaatccattacaataattacaattttaatatttctatttacatattaagtcaa 606  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5273875 ggccactcagtggacttccctaagttttagttacatagaactaggacaaatccattacaataattacaattttaatatttctatttacatattaagtcaa 5273776  T
Q  607 tgcttatactactaacatttttcttgtgattgagtataaatatgtccacaactttttgagtatggcaaagcaaacattttacttagctttaccaaaaaat 706  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5273775 tgcttatactactaacatttttcttgtgattgagtataaatatgtccacaactttttgagtatggcaaagcaaacattttacttagctttaccaaaaaat 5273676  T
Q  707 aattataaccct 718  Q
    ||||||||||||    
T  5273675 aattataaccct 5273664  T

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