View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1946_high_43 (Length: 416)

Name: NF1946_high_43
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1946_high_43
NF1946_high_43
[»] chr2 (25 HSPs)
chr2 (14-399)||(15007762-15008159)
chr2 (16-399)||(14547065-14547460)
chr2 (16-399)||(14512242-14512643)
chr2 (16-399)||(14528692-14529093)
chr2 (16-399)||(14542918-14543319)
chr2 (16-399)||(15013174-15013566)
chr2 (16-399)||(31969091-31969486)
chr2 (16-399)||(14520082-14520477)
chr2 (20-393)||(15003881-15004265)
chr2 (20-399)||(14533930-14534318)
chr2 (20-391)||(15019670-15020053)
chr2 (61-399)||(14567359-14567709)
chr2 (59-399)||(15023744-15024096)
chr2 (59-399)||(14850331-14850683)
chr2 (59-396)||(14552318-14552667)
chr2 (260-399)||(14847625-14847760)
chr2 (286-391)||(14525119-14525224)
chr2 (53-106)||(14476142-14476195)
chr2 (53-91)||(14144908-14144946)
chr2 (53-91)||(14162259-14162297)
chr2 (56-90)||(14524886-14524920)
chr2 (54-91)||(14485237-14485274)
chr2 (43-91)||(14481339-14481387)
chr2 (57-91)||(14165319-14165353)
chr2 (53-91)||(14502177-14502215)
[»] chr4 (2 HSPs)
chr4 (16-135)||(17357019-17357138)
chr4 (56-106)||(49553376-49553426)
[»] chr3 (1 HSPs)
chr3 (103-223)||(38524890-38525010)


Alignment Details
Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 14 - 399
Target Start/End: Original strand, 15007762 - 15008159
Alignment:
Q  14 gaaccatggttactttcatcacaaccccacaaaatgttattgccaaagtttcaattttttctatccaaaggtgcttcttcagctgatattgtttcattgt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  15007762 gaaccatggttactttcatcacaaccccacaaaatgttattgccaaagtttgaatattttctatccaaaggtgcttcttcagctgatattgtttcattgt 15007861  T
Q  114 taactgcaaaccctacaattttacgaagtagcttgggcaaacgaataatccctctttttgaattgttaagtaggttctttaaaaccaacaaggatatcat 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15007862 taactgcaaaccctacaattttacgaagtagcttgggcaaacgaataatccctctttttgaattgttaagtaggttctttaaaaccaacaaggatatcat 15007961  T
Q  214 tctttgcttacttcgacattcaacgt------------gtccatatcaccttattgtggctaatatcaatttgatgactggttttggagtttgtgattct 301  Q
    | ||||||||||||||||||||| ||            | ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  15007962 tgtttgcttacttcgacattcaatgtcgtttattattagcccatatcaccttattgtggctaatatcaatttgataactggttttggagtttctgattct 15008061  T
Q  302 gccattgctaaattgcttctgaaaaggccatctatatttggttcaactgatttgattaagtcattggaggaagttaagcgtttagggtttgatccttc 399  Q
     |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  15008062 accattgctaaattgcttcagaaaaggccatctatatttggttcaactgatttgattaagtcattagaggaagttaagcgtttagggtttcatccttc 15008159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 16 - 399
Target Start/End: Original strand, 14547065 - 14547460
Alignment:
Q  16 accatggttactttcatcacaaccccacaaaatgttattgccaaagtttcaattttttctatccaaaggtgcttcttcagctgatattgtttcattgtta 115  Q
    ||||||||||||||||| |||||||||||| ||  | ||||| |||||| ||||||||||||||||||||||| ||||| ||||||||||||||||  ||    
T  14547065 accatggttactttcattacaaccccacaatataattttgcccaagtttgaattttttctatccaaaggtgctacttcatctgatattgtttcattcata 14547164  T
Q  116 actgcaaaccctacaattttacgaagtagcttgggcaaacgaataatccctctttttgaattgttaagtaggttctttaaaaccaacaaggatatcattc 215  Q
    || | |||||||  |||||| |||||||||||||  |||||||| |||||||||||| ||||||||||||| ||||| ||||||||||||||| ||||||    
T  14547165 acagaaaaccctcgaattttgcgaagtagcttggagaaacgaattatccctctttttcaattgttaagtagcttcttgaaaaccaacaaggatgtcattc 14547264  T
Q  216 tttgcttacttcgacattcaacgt------------gtccatatcaccttattgtggctaatatcaatttgatgactggttttggagtttgtgattctgc 303  Q
    ||||||||||||||||||| || |             | | ||||||||| |||  |||||||||||||||||||||| ||||||||||| ||||||||     
T  14547265 tttgcttacttcgacattcgacttatgttacttttaattcctatcaccttgttgccgctaatatcaatttgatgactgattttggagtttctgattctgt 14547364  T
Q  304 cattgctaaattgcttctgaaaaggccatctatatttggttcaactgatttgattaagtcattggaggaagttaagcgtttagggtttgatccttc 399  Q
    ||||||||  |||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  14547365 cattgctagcttgcttcaaaaaaggccatctatatttggttcgactgatttgattaagtcattggaggaagttaagtgtttagggtttgatccttc 14547460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 16 - 399
Target Start/End: Original strand, 14512242 - 14512643
Alignment:
Q  16 accatggttactttcatcacaaccccacaaaatgttattgccaaagtttcaattttttctatccaaaggtgcttcttcagctgatattgtttcattgtta 115  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| | |||||||||  ||||||||||| ||||||||    
T  14512242 accatggttactttcatcacaaccccacaaaaggtttttgccaaagtttcaattttttctatccaatgctgcttcttcctctgatattgttccattgtta 14512341  T
Q  116 actgcaaaccctacaattttacgaagtagcttgggc------aaacgaataatccctctttttgaattgttaagtaggttctttaaaaccaacaaggata 209  Q
    ||| ||||||||| |||||||||||||||||||| |      |||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  14512342 actacaaaccctagaattttacgaagtagcttggacttggagaaacaaataatccctctttttgaattattaagtaggttcttgaaaaccaacaaggata 14512441  T
Q  210 tcattctttgcttacttcgacatt------------caacgtgtccatatcaccttattgtggctaatatcaatttgatgactggttttggagtttgtga 297  Q
    |||||||||||||| ||||| |||            | ||   ||| ||||||||||||||| ||||||||||||||||| ||| ||||||||||| |||    
T  14512442 tcattctttgcttaattcgatattggactgcatttgctactaatccctatcaccttattgtgtctaatatcaatttgatgtctgattttggagtttctga 14512541  T
Q  298 ttctgccattgctaaattgcttctgaaaaggccatctatatttggttcaactgatttgattaagtcattggaggaagttaagcgtttagggtttgatcct 397  Q
    |  ||  |||| ||  ||||||| |  |||||| ||||||||||||||||  ||||||||||||||||| ||||||||||||  |||||||||| |||||    
T  14512542 taatgttattggtagtttgcttcagtcaaggccgtctatatttggttcaaaggatttgattaagtcattagaggaagttaaggatttagggtttcatcct 14512641  T
Q  398 tc 399  Q
    ||    
T  14512642 tc 14512643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 16 - 399
Target Start/End: Original strand, 14528692 - 14529093
Alignment:
Q  16 accatggttactttcatcacaaccccacaaaatgttattgccaaagtttcaattttttctatccaaaggtgcttcttcagctgatattgtttcattgtta 115  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| | |||||||||  ||||||||||| ||||||||    
T  14528692 accatggttactttcatcacaaccccacaaaaggtttttgccaaagtttcaattttttctatccaatgctgcttcttcctctgatattgttccattgtta 14528791  T
Q  116 actgcaaaccctacaattttacgaagtag------cttgggcaaacgaataatccctctttttgaattgttaagtaggttctttaaaaccaacaaggata 209  Q
    ||| ||||||||| |||||||||||||||      |||||  |||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  14528792 actacaaaccctagaattttacgaagtagcctggacttggagaaacaaataatccctctttttgaattattaagtaggttcttgaaaaccaacaaggata 14528891  T
Q  210 tcattctttgcttacttcgacatt------------caacgtgtccatatcaccttattgtggctaatatcaatttgatgactggttttggagtttgtga 297  Q
    |||||||||||||| ||||| |||            | ||   ||| ||||||||||||||| ||||||||||||||||| ||| ||||||||||| |||    
T  14528892 tcattctttgcttaattcgatattggactgcatttgctactaatccctatcaccttattgtgtctaatatcaatttgatgtctgattttggagtttctga 14528991  T
Q  298 ttctgccattgctaaattgcttctgaaaaggccatctatatttggttcaactgatttgattaagtcattggaggaagttaagcgtttagggtttgatcct 397  Q
    |  ||  |||| ||  ||||||| |  |||||| ||||||||||||||||  ||||||||||||||||||||||||||||||  |||||||||| |||||    
T  14528992 taatgttattggtagtttgcttcagtcaaggccgtctatatttggttcaaaggatttgattaagtcattggaggaagttaaggatttagggtttcatcct 14529091  T
Q  398 tc 399  Q
    ||    
T  14529092 tc 14529093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 16 - 399
Target Start/End: Original strand, 14542918 - 14543319
Alignment:
Q  16 accatggttactttcatcacaaccccacaaaatgttattgccaaagtttcaattttttctatccaaaggtgcttcttcagctgatattgtttcattgtta 115  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| | |||||||||  ||||||||||| ||||||||    
T  14542918 accatggttactttcatcacaaccccacaaaaggtttttgccaaagtttcaattttttctatccaatgctgcttcttcctctgatattgttccattgtta 14543017  T
Q  116 actgcaaaccctacaattttacgaagtag------cttgggcaaacgaataatccctctttttgaattgttaagtaggttctttaaaaccaacaaggata 209  Q
    ||| ||||||||| |||||||||||||||      |||||  |||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  14543018 actacaaaccctagaattttacgaagtagcctggacttggagaaacaaataatccctctttttgaattattaagtaggttcttgaaaaccaacaaggata 14543117  T
Q  210 tcattctttgcttacttcgacatt------------caacgtgtccatatcaccttattgtggctaatatcaatttgatgactggttttggagtttgtga 297  Q
    |||||||||||||| ||||| |||            | ||   ||| ||||||||||||||| ||||||||||||||||| ||| ||||||||||| |||    
T  14543118 tcattctttgcttaattcgatattggactgcatttgctactaatccctatcaccttattgtgtctaatatcaatttgatgtctgattttggagtttctga 14543217  T
Q  298 ttctgccattgctaaattgcttctgaaaaggccatctatatttggttcaactgatttgattaagtcattggaggaagttaagcgtttagggtttgatcct 397  Q
    |  ||  |||| ||  ||||||| |  |||||| ||||||||||||||||  ||||||||||||||||||||||||||||||  |||||||||| |||||    
T  14543218 taatgttattggtagtttgcttcagtcaaggccgtctatatttggttcaaaggatttgattaagtcattggaggaagttaaggatttagggtttcatcct 14543317  T
Q  398 tc 399  Q
    ||    
T  14543318 tc 14543319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 16 - 399
Target Start/End: Original strand, 15013174 - 15013566
Alignment:
Q  16 accatggttactttcatcacaaccccacaaaatgttattgccaaagtttcaattttttctatccaaaggtgcttcttcagctgatattgtttcattgtta 115  Q
    |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||| |||||||||| | ||||||||||| ||||||||    
T  15013174 accatggttactttcatcacaaccccacaaaaggttattgcctaagtttcaattttttatatccaacggtgcttctttatctgatattgttccattgtta 15013273  T
Q  116 actgcaaaccctacaattttacgaagtagcttgggcaaacgaataatccctctttttgaattgttaagtaggttctttaaaaccaacaaggatatcattc 215  Q
    ||||||||||||   ||||||| ||||||||||| |||||| ||||||||||||||| |||| |||| |||||| || ||||||||||||||||  |||     
T  15013274 actgcaaaccctcacattttacaaagtagcttggacaaacggataatccctctttttcaattattaaataggtttttgaaaaccaacaaggatactattg 15013373  T
Q  216 tttgcttacttcgacattcaacgt-gtccata--------tcaccttattgtggctaatatcaatttgatgactggttttggagtttgtgattctgccat 306  Q
    ||| |||| ||| | |||||| || ||  |||        ||||||| | | |||||||||||||||||||  || ||||||||||||||||||||||||    
T  15013374 tttacttaattctaaattcaaggtcgtttataactccccttcaccttctagaggctaatatcaatttgatggttgattttggagtttgtgattctgccat 15013473  T
Q  307 tgctaaattgcttctgaaaaggccatctatatttggttcaactgatttgattaagtcattggaggaagttaagcgtttagggtttgatccttc 399  Q
    ||||| ||||||||  |  |||  |||||||| | |||||| |||||||||||||||||||||||| |||||| ||||||||||||| |||||    
T  15013474 tgctagattgcttcgaactaggaaatctatatattgttcaaatgatttgattaagtcattggaggacgttaagggtttagggtttgacccttc 15013566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 16 - 399
Target Start/End: Original strand, 31969091 - 31969486
Alignment:
Q  16 accatggttactttcatcacaaccccacaaaatgttattgccaaagtttcaattttttctatccaaaggtgcttcttcagctgatattgtttcattgtta 115  Q
    |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||| |||||||||| | ||||||||||| ||||||||    
T  31969091 accatggttactttcatcacaaccccacaaaaggttattgcctaagtttcaattttttatatccaatggtgcttctttatctgatattgttccattgtta 31969190  T
Q  116 actgcaaaccctacaattttacgaagtagcttgggcaaacgaataatccctctttttgaattgttaagtaggttctttaaaaccaacaaggatatcattc 215  Q
    ||||||||||||   ||||||| ||||||||||| |||||||||||||||||||||| ||||||||| |||||| |  ||||||||||||||||  |||     
T  31969191 actgcaaaccctcacattttacaaagtagcttggacaaacgaataatccctctttttcaattgttaaataggttttcgaaaaccaacaaggatactattg 31969290  T
Q  216 tttgcttacttcgacattcaacgt-gtcca-----tatc------accttattgtggctaatatcaatttgatgactggttttggagtttgtgattctgc 303  Q
    ||| |||| |||||||||||| || ||  |     ||||      ||||| | | |||||||||||||||||||  || ||||||||||| |||||||||    
T  31969291 tttacttaattcgacattcaaggtcgtttattgtttatccccttaaccttctagaggctaatatcaatttgatggttgattttggagtttatgattctgc 31969390  T
Q  304 cattgctaaattgcttctgaaaaggccatctatatttggttcaactgatttgattaagtcattggaggaagttaagcgtttagggtttgatccttc 399  Q
    |||||||| ||||||||  |  |||  |||||||| | |||||| |||||||||||||||||||||||| |||||| ||||||||||||| |||||    
T  31969391 cattgctagattgcttcgaactaggaaatctatatcttgttcaaatgatttgattaagtcattggaggacgttaagggtttagggtttgacccttc 31969486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 16 - 399
Target Start/End: Original strand, 14520082 - 14520477
Alignment:
Q  16 accatggttactttcatcacaaccccacaaaatgttattgccaaagtttcaattttttctatccaaaggtgcttcttcagctgatattgtttcattgtta 115  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||  |||||||| ||    |||||    
T  14520082 accatggttactttcatcacaaccccacaaaatggtattgccaaagtttcaatttttactctccaaaggtgcttcttcctctgatattattcgcctgtta 14520181  T
Q  116 actgcaaaccctacaattttacgaagtagcttgggcaaacgaataatccctctttttgaattgttaagtaggttctttaaaaccaacaaggatatcattc 215  Q
    |||||||| |||| |||||||| |||||| ||||  ||||||||||||||||||||| ||||||||| |||||| |  |||||||||||||||| ||||     
T  14520182 actgcaaatcctaaaattttacaaagtagtttggagaaacgaataatccctctttttcaattgttaaataggttttcgaaaaccaacaaggataccattg 14520281  T
Q  216 tttgcttacttcgacattca------------acgtgtccatatcaccttattgtggctaatatcaatttgatgactggttttggagtttgtgattctgc 303  Q
    |||||||| ||||| |||||            |  | ||| |||||  || | | |||||||||||||||||||| ||  |||||||||| |||||||      
T  14520282 tttgcttaattcgaaattcactatcgtttattatttatccctatcatgttctagaggctaatatcaatttgatgattgaatttggagtttctgattctaa 14520381  T
Q  304 cattgctaaattgcttctgaaaaggccatctatatttggttcaactgatttgattaagtcattggaggaagttaagcgtttagggtttgatccttc 399  Q
    |||||||| ||||||||  | |||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||    
T  14520382 cattgctagattgcttcaaacaaggtcatctatatttggttcaactgatttgattaagtcattagaggaagttaagtgtttagggtttcatccttc 14520477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 20 - 393
Target Start/End: Complemental strand, 15004265 - 15003881
Alignment:
Q  20 tggttactttcatcacaaccccacaaaatgttattgccaaagtttcaattttttctatccaaaggtgcttcttcagctgatattgtttcattgttaactg 119  Q
    |||||||||||||| ||||||||||||   |||||| |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||     
T  15004265 tggttactttcatcgcaaccccacaaaggtttattgtcaaagtttcaattttttctatccaaaggtgcttcttcctctgatattgtttcattgttaactt 15004166  T
Q  120 caaaccctacaattttacgaagtagcttgggcaaacgaataatccctctttttgaattgttaagtaggttctttaaaaccaacaaggatatcattctttg 219  Q
    ||||||||  |||||||| |||||||||||  || |||||||||||||||||||||||||||| |||||| ||  ||||||||||||||| |||| || |    
T  15004165 caaaccctcgaattttacaaagtagcttggagaatcgaataatccctctttttgaattgttaaataggtt-ttcgaaaccaacaaggataccattgttgg 15004067  T
Q  220 cttacttcgacattcaa---cg---------tgtccatatcaccttattgtggctaatatcaatttgatgactggttttggagtttgtgattctgccatt 307  Q
    |||| ||||| ||||||   ||         | ||| |||||| || | | |||||||||||||||||||   | |||||  |||| ||||||| |||||    
T  15004066 cttaattcgatattcaagatcgtttactttttatccctatcactttctagaggctaatatcaatttgatggtggattttgatgtttctgattctaccatt 15003967  T
Q  308 gctaaattgcttctgaaaaggccatctatatttggttcaactgatttgattaagtcattggaggaagttaagcgtttagggtttga 393  Q
    |||| ||||||||  |||||||||||||||||||||||||  |||||||||| ||||||||||||||||||| |||||||||||||    
T  15003966 gctagattgcttcaaaaaaggccatctatatttggttcaaaggatttgattatgtcattggaggaagttaagtgtttagggtttga 15003881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 20 - 399
Target Start/End: Original strand, 14533930 - 14534318
Alignment:
Q  20 tggttactttcatcacaaccccacaaaatgttattgccaaagtttcaattttttctatccaaaggtgcttcttcagctgatattgtttcattgttaactg 119  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||| |||||||||||     
T  14533930 tggttactttcatcacaaccccacaaaaggttattgccaaagtttcaattttttctatccaatggtgcttctttatctgatattgttccattgttaacta 14534029  T
Q  120 caaaccctacaattttacgaagtagcttgggcaaacgaataatccctctttttgaattgttaagtaggttctttaaaaccaacaaggatatcattctttg 219  Q
    ||||||||  ||||||||||||||||||||  |||| |||||||||||||||| |||| |||||||||| ||| |||||||||| ||||  |||| ||||    
T  14534030 caaaccctcgaattttacgaagtagcttggagaaacaaataatccctctttttcaattattaagtaggtgcttaaaaaccaacagggatgccattatttg 14534129  T
Q  220 cttacttcgacatt---caacgtgtcc------atatcaccttattgtggctaatatcaatttgatgactggttttggagtttgtgattctgccattgct 310  Q
    |||| |   |||||   | || | | |       ||||||||||||||||||||||||||||||||||||| ||||||| ||  | |||||| |||||||    
T  14534130 cttaataaaacattggactacatttactatttattatcaccttattgtggctaatatcaatttgatgactgattttggaattcctcattctgtcattgct 14534229  T
Q  311 aaattgcttctgaaaaggccatctatatttggttcaactgatttgattaagtcattggaggaagttaagcgtttagggtttgatccttc 399  Q
    | |||| |||     || |||| | || || ||||||  ||||||||||| |||||||||||| ||||| |||||||||||||||||||    
T  14534230 agattgattcgatctagaccatttttaatttgttcaaaggatttgattaattcattggaggaaattaagggtttagggtttgatccttc 14534318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 20 - 391
Target Start/End: Original strand, 15019670 - 15020053
Alignment:
Q  20 tggttactttcatcacaaccccacaaaatgttattgccaaagtttcaattttttctatccaaaggtgcttcttcagctgatattgtttcattgttaactg 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  | | | ||| |||  |||||||| || ||||||||||||    
T  15019670 tggttactttcatcacaaccccacaaaatgttattgccaaagtttcaattctttctatctgatgcttcttattcctctgatattattccattgttaactg 15019769  T
Q  120 caaaccctacaattttacgaagtagcttgggcaaacgaataatccctctttttgaattgttaagtaggttctttaaaaccaacaaggatatcattctttg 219  Q
    || |||||| |||||||| | |||||||||  | ||||||||||||| |||||||||| |||||||||| ||| ||||||||||||||||||||| ||||    
T  15019770 cacaccctagaattttacaaggtagcttggagagacgaataatccctttttttgaattattaagtaggtacttgaaaaccaacaaggatatcattgtttg 15019869  T
Q  220 cttacttcgaca------------ttcaacgtgtccatatcaccttattgtggctaatatcaatttgatgactggttttggagtttgtgattctgccatt 307  Q
    |||| ||||| |            ||| ||   |||  || ||| ||||||| |||||||||||||||||  || ||||||| ||| ||||||| |||||    
T  15019870 cttaattcgatattggactgcattttctactaatccccatgaccgtattgtgtctaatatcaatttgatggttgattttggattttctgattctaccatt 15019969  T
Q  308 gctaaattgcttctgaaaaggccatctatatttggttcaactgatttgattaagtcattggaggaagttaagcgtttagggttt 391  Q
    |||| ||||||||  | ||||||||||||||||||||||| |||| ||||||||| |||||||||| ||||| |||||||||||    
T  15019970 gctagattgcttcgaacaaggccatctatatttggttcaaatgatatgattaagttattggaggaaattaagggtttagggttt 15020053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 61 - 399
Target Start/End: Original strand, 14567359 - 14567709
Alignment:
Q  61 gtttcaattttttctatccaaaggtgcttcttcagctgatattgtttcattgttaactgcaaaccctacaattttacgaagtagcttgggcaaacgaata 160  Q
    |||||| ||||||||||||||||||||||||||  |||| |||||||||||||||||| ||||||||| |||||| |  | ||| ||||  |||||||||    
T  14567359 gtttcacttttttctatccaaaggtgcttcttcctctgagattgtttcattgttaacttcaaaccctataattttgcatattagtttggagaaacgaata 14567458  T
Q  161 atccctctttttgaattgttaagtaggttctttaaaaccaacaaggatatcattctttgcttacttcgacattcaac------------gtgtccatatc 248  Q
    ||||||||||||||||||||||||| |||||| ||||||||||| ||||||||| |||||||| |||| ||||||||            |  | | ||||    
T  14567459 atccctctttttgaattgttaagtaagttcttgaaaaccaacaaagatatcattatttgcttaattcggcattcaactgcattttctatgaattcctatc 14567558  T
Q  249 accttattgtggctaatatcaatttgatgactggttttggagtttgtgattctgccattgctaaattgcttctgaaaaggccatctatatttggttcaac 348  Q
    |||||||| ||| |||| ||||||||||| ||| ||||||||||| ||||  || ||||||||  ||||||| |  ||||||||||||| |||||||||     
T  14567559 accttattatggataatgtcaatttgatgtctgattttggagtttctgataatgtcattgctagtttgcttcagtcaaggccatctatagttggttcaaa 14567658  T
Q  349 tgatttgattaagtcattggaggaagttaagcgtttagggtttgatccttc 399  Q
     || ||||||||||||||||||||||||||| |||||||||||||||||||    
T  14567659 ggaattgattaagtcattggaggaagttaagagtttagggtttgatccttc 14567709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 59 - 399
Target Start/End: Original strand, 15023744 - 15024096
Alignment:
Q  59 aagtttcaattttttctatccaaaggtgcttcttcagctgatattgtttcattgttaactgcaaaccctacaattttacgaagtagcttgggcaaacgaa 158  Q
    |||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||| || |||||  |||||||| || |||||| |  || ||||    
T  15023744 aagtttgaattttttctatccaaaggtgcttcttcatctcatattgtttcattgttaactacataccctcaaattttacaaactagctttgagaatcgaa 15023843  T
Q  159 taatccctctttttgaattgttaagtaggttctttaaaaccaacaaggatatcattctttgcttacttcgacattcaacgtg------------tccata 246  Q
    |||||||||||||| ||||| |||  |||||||||||||| ||||||||||  ||| |||||||| ||| |||||| |  ||            |||  |    
T  15023844 taatccctctttttaaattgctaacaaggttctttaaaactaacaaggatactattgtttgcttaattcaacattcgaaatgggttactagtcatcccca 15023943  T
Q  247 tcaccttattgtggctaatatcaatttgatgactggttttggagtttgtgattctgccattgctaaattgcttctgaaaaggccatctatatttggttca 346  Q
    ||||||||||||||||| ||||||| ||||  ||| ||||||||||| |||||||| |||||||| ||||||||  || | |||||||||||||||||||    
T  15023944 tcaccttattgtggctagtatcaatctgatttctgattttggagtttctgattctgtcattgctagattgcttcaaaataagccatctatatttggttca 15024043  T
Q  347 actgatttgattaagtcattggaggaagttaagcgtttagggtttgatccttc 399  Q
    |  |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  15024044 aaggatttgattaagtcattggaggaagttaagagtttagggtttgatccttc 15024096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 59 - 399
Target Start/End: Complemental strand, 14850683 - 14850331
Alignment:
Q  59 aagtttcaattttttctatccaaaggtgcttcttcagctgatattgtttcattgttaactgcaaaccctacaattttacgaagtagcttgggcaaacgaa 158  Q
    |||||| ||| ||||||||||||||||||||||||  || ||||| |||||||||||||| ||||||||  |||||||| |  |||||| | ||||||||    
T  14850683 aagtttgaatattttctatccaaaggtgcttcttcctctcatattatttcattgttaacttcaaaccctcaaattttacaatatagcttagacaaacgaa 14850584  T
Q  159 taatccctctttttgaattgttaagtaggttctttaaaaccaacaaggatatcattctttgcttacttcgacattcaacgtg-------------tccat 245  Q
    ||||||||||||||||||| |||||||||||||| ||| ||| |||||||| |||||| |||||| |||||  ||| || ||             ||| |    
T  14850583 taatccctctttttgaattattaagtaggttcttgaaatccagcaaggataccattctctgcttaattcgatgttccac-tgcatttactataaatccct 14850485  T
Q  246 atcaccttattgtggctaatatcaatttgatgactggttttggagtttgtgattctgccattgctaaattgcttctgaaaaggccatctatatttggttc 345  Q
    ||| | |||||||||||||||||||||||||||||| ||||||||||| ||||  || ||||||||   |||||| |  | |||||||| ||||||||||    
T  14850484 atcgcattattgtggctaatatcaatttgatgactgattttggagtttctgataatgtcattgctagtatgcttcagtcatggccatctgtatttggttc 14850385  T
Q  346 aactgatttgattaagtcattggaggaagttaagcgtttagggtttgatccttc 399  Q
    ||  |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  14850384 aaaggatttgattaagtcattggaggaagttaagtgtttagggtttgatccttc 14850331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 59 - 396
Target Start/End: Original strand, 14552318 - 14552667
Alignment:
Q  59 aagtttcaattttttctatccaaaggtgcttcttcagctgatattgtttcattgttaactgcaaaccctacaattttacgaagtagcttgggcaaacgaa 158  Q
    |||||| ||| ||||||||||||||||||||||||| || ||||| |||||||||||||| ||||||||  |||||||| ||||||| ||| ||||||||    
T  14552318 aagtttgaatattttctatccaaaggtgcttcttcatctcatattatttcattgttaacttcaaaccctcaaattttacaaagtagcctggacaaacgaa 14552417  T
Q  159 taatccctctttttgaattgttaagtaggttctttaaaaccaacaaggatatcattctttgcttacttcgacattcaacgtg------------tccata 246  Q
    ||||||||||||||||||||||||| | |||||||||||| ||||||||||  ||| |||||||| |||||||||| |  ||            |||  |    
T  14552418 taatccctctttttgaattgttaagaatgttctttaaaactaacaaggatacaattgtttgcttaattcgacattcgaaatgggttgctagttatcccca 14552517  T
Q  247 tcaccttattgtggctaatatcaatttgatgactggttttggagtttgtgattctgccattgctaaattgcttctgaaaaggccatctatatttggttca 346  Q
    ||||||||||||||||||||| ||| ||||| ||| |||||| || | | |||||| |||||||| ||||||||  |  |  |||||||||||| |||||    
T  14552518 tcaccttattgtggctaatattaatctgatgtctgattttggcgtgtctcattctgtcattgctagattgcttcaaattaaaccatctatattttgttca 14552617  T
Q  347 actgatttgattaagtcattggaggaagttaagcgtttagggtttgatcc 396  Q
    |  |||||||||||||||||||||||||||||  ||||||||||| ||||    
T  14552618 aaggatttgattaagtcattggaggaagttaaaggtttagggtttcatcc 14552667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 260 - 399
Target Start/End: Complemental strand, 14847760 - 14847625
Alignment:
Q  260 gctaatatcaatttgatgactggttttggagtttgtgattctgccattgctaaattgcttctgaaaaggccatctatatttggttcaactgatttgatta 359  Q
    |||| ||||||||| | ||||| |||||||||||| |||||| |||||| || ||||||||  |||||| ||||||||||||||  ||||| ||||||||    
T  14847760 gctattatcaattttaggactgattttggagtttgcgattctaccattgatagattgcttcaaaaaaggtcatctatatttggtcaaactggtttgatta 14847661  T
Q  360 agtcattggaggaagttaagcgtttagggtttgatccttc 399  Q
    ||||||    ||| |||||  ||||||| |||||||||||    
T  14847660 agtcat----ggaggttaacggtttaggttttgatccttc 14847625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 286 - 391
Target Start/End: Original strand, 14525119 - 14525224
Alignment:
Q  286 tggagtttgtgattctgccattgctaaattgcttctgaaaaggccatctatatttggttcaactgatttgattaagtcattggaggaagttaagcgttta 385  Q
    ||||||||||||||| || ||||||| ||||||| ||| ||| ||| ||||| |||| |||| |||||| ||||   | ||||||||||||||| |||||    
T  14525119 tggagtttgtgattccgctattgctagattgcttttgacaagaccagctatacttggatcaattgatttcattagtactttggaggaagttaagggttta 14525218  T
Q  386 gggttt 391  Q
    ||||||    
T  14525219 gggttt 14525224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 106
Target Start/End: Complemental strand, 14476195 - 14476142
Alignment:
Q  53 ttgccaaagtttcaattttttctatccaaaggtgcttcttcagctgatattgtt 106  Q
    ||||||||||||||||||||||| ||||||||||||||| || |||| ||||||    
T  14476195 ttgccaaagtttcaattttttctctccaaaggtgcttctacatctgacattgtt 14476142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 91
Target Start/End: Original strand, 14144908 - 14144946
Alignment:
Q  53 ttgccaaagtttcaattttttctatccaaaggtgcttct 91  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  14144908 ttgccaaagtttcaattttttctctccaaaggtgcttct 14144946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 91
Target Start/End: Complemental strand, 14162297 - 14162259
Alignment:
Q  53 ttgccaaagtttcaattttttctatccaaaggtgcttct 91  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  14162297 ttgccaaagtttcaattttttctctccaaaggtgcttct 14162259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 56 - 90
Target Start/End: Original strand, 14524886 - 14524920
Alignment:
Q  56 ccaaagtttcaattttttctatccaaaggtgcttc 90  Q
    |||||||||||||||||||||||||||||||||||    
T  14524886 ccaaagtttcaattttttctatccaaaggtgcttc 14524920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 54 - 91
Target Start/End: Original strand, 14485237 - 14485274
Alignment:
Q  54 tgccaaagtttcaattttttctatccaaaggtgcttct 91  Q
    |||||||||||||||||||||| |||||||||||||||    
T  14485237 tgccaaagtttcaattttttctctccaaaggtgcttct 14485274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 91
Target Start/End: Complemental strand, 14481387 - 14481339
Alignment:
Q  43 caaaatgttattgccaaagtttcaattttttctatccaaaggtgcttct 91  Q
    ||||| ||| ||||||||||||||||||| ||| |||||||||||||||    
T  14481387 caaaacgttgttgccaaagtttcaattttgtctctccaaaggtgcttct 14481339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 57 - 91
Target Start/End: Complemental strand, 14165353 - 14165319
Alignment:
Q  57 caaagtttcaattttttctatccaaaggtgcttct 91  Q
    ||||||||||||||||||| |||||||||||||||    
T  14165353 caaagtttcaattttttctctccaaaggtgcttct 14165319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 91
Target Start/End: Original strand, 14502177 - 14502215
Alignment:
Q  53 ttgccaaagtttcaattttttctatccaaaggtgcttct 91  Q
    ||||| ||||||||||||||||| |||||||||||||||    
T  14502177 ttgccgaagtttcaattttttctctccaaaggtgcttct 14502215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 16 - 135
Target Start/End: Complemental strand, 17357138 - 17357019
Alignment:
Q  16 accatggttactttcatcacaaccccacaaaatgttattgccaaagtttcaattttttctatccaaaggtgcttcttcagctgatattgtttcattgtta 115  Q
    |||||||||  |||||| |||| ||||||| ||  | |||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||  ||    
T  17357138 accatggtttgtttcattacaatcccacaatataattttgccaaagtttgaattttttctatccaaaggtgctacttcatctgatattgtttcattcgta 17357039  T
Q  116 actgcaaaccctacaatttt 135  Q
    ||||||||||||||||||||    
T  17357038 actgcaaaccctacaatttt 17357019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 106
Target Start/End: Original strand, 49553376 - 49553426
Alignment:
Q  56 ccaaagtttcaattttttctatccaaaggtgcttcttcagctgatattgtt 106  Q
    ||||||||||||||||| || ||||||||||||||| |  |||||||||||    
T  49553376 ccaaagtttcaatttttactctccaaaggtgcttctacttctgatattgtt 49553426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 103 - 223
Target Start/End: Complemental strand, 38525010 - 38524890
Alignment:
Q  103 tgtttcattgttaactgcaaaccctacaattttacgaagtagcttgggcaaacgaataatccctctttttgaattgttaagtaggttctttaaaaccaac 202  Q
    |||||||||||||| |||||||||||||||||| |  | | | ||||  ||| ||| ||||||||||||||||| ||||||||||||  | ||||||||     
T  38525010 tgtttcattgttaattgcaaaccctacaattttgcagatttgtttggcgaaaagaacaatccctctttttgaatcgttaagtaggtttctgaaaaccaag 38524911  T
Q  203 aaggatatcattctttgctta 223  Q
    ||| ||  |||||||||||||    
T  38524910 aagaatgccattctttgctta 38524890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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