View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1946_high_46 (Length: 407)
Name: NF1946_high_46
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_high_46 |
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Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 23 - 390
Target Start/End: Original strand, 52167748 - 52168134
Alignment:
| Q |
23 |
actattttgggtcttgcagatttttgaagggataaattggtcttcaagttatatttaaatgagatagtaagatatgtatctataagacgaaacaggcaac |
122 |
Q |
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| T |
52167748 |
actattttgggtcttgcagatttttgaagggataaattggtcttcacgttatatttaaatgagatagtaagatatgtatctataagacgaaacaggcaac |
52167847 |
T |
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| Q |
123 |
tagccatgacaatcataccacatgatttacatatttaatgcggttcaggccacaaatccataatgatttaacagaatcataatatatttaatacgctctt |
222 |
Q |
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| T |
52167848 |
tagccatgacaatcataccacataatttacatatttaacgcggttcaggccacaaatccataatgatttaacagaatcataatatatttaatacgctctt |
52167947 |
T |
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| Q |
223 |
tattc------------------ttgtttttatgattaggaccaaaaaggaatgtaatagaccatatattattaaattatatgatcctc---aaataata |
301 |
Q |
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| T |
52167948 |
tattcttgttttaatagtcacaattgtttttatgattaggaccaaaaaggaatgtaatagaccata---tattaaattatatgatcatctaataataata |
52168044 |
T |
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| Q |
302 |
tctcagactagaaatgaatga-ttttgcttttataatctgagtaattgcgatggatttcacctatcactcattggtgcacgcctgtattc |
390 |
Q |
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| T |
52168045 |
tctcagactagaaatgaatgatttttgcttttataatctgagtaattgcgatggatttcccctatcactcattggtggacgcctgtattc |
52168134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 106 - 234
Target Start/End: Original strand, 19327593 - 19327719
Alignment:
| Q |
106 |
aagacgaaacaggcaactagccatgacaatcataccacatgatttacatatttaatgcggttcaggccacaaatccataatgatttaacagaatcataat |
205 |
Q |
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| T |
19327593 |
aagacgaaacatgcaactagccatgacagtcatagcacatgatttacatatttaatgtcgttcaggccacaaatccataatgatttaacataatcata-- |
19327690 |
T |
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| Q |
206 |
atatttaatacgctctttattcttgtttt |
234 |
Q |
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| T |
19327691 |
atatttaatacggtatttattgttgtttt |
19327719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 236 - 382
Target Start/End: Original strand, 19328220 - 19328363
Alignment:
| Q |
236 |
atgattaggaccaaaaaggaatgtaatagaccatatattattaaattatatgatcctcaaataatatctcagactagaaatgaatgattttgcttttata |
335 |
Q |
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||||||| | |||||||||| ||||||| |||||||||| ||||||||| |||||| ||||||||||||||| ||||| ||||||||||||||||| |
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| T |
19328220 |
atgattaaggccaaaaaggagtgtaatataccatatatt---aaattatataatcctctaataatatctcagaccagaaagaaatgattttgcttttatc |
19328316 |
T |
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| Q |
336 |
atctgagtaattgcgatggatttcacctatcactcattggtgcacgc |
382 |
Q |
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| T |
19328317 |
attcgagtaattgcgatggattccccctatcactcattggtacacgc |
19328363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 258 - 351
Target Start/End: Original strand, 19328047 - 19328137
Alignment:
| Q |
258 |
gtaatagaccatatattattaaattatatgatcctcaaataatatctcagactagaaatgaatgattttgcttttataatctgagtaattgcga |
351 |
Q |
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|||||||||||||||||| ||||| ||||||||| ||||||||||||||| ||||| |||||||||||||||||| |||| ||||||||||| |
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| T |
19328047 |
gtaatagaccatatatta---aattaaatgatcctctaataatatctcagaccagaaaggaatgattttgcttttatcatctaagtaattgcga |
19328137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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