View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1946_high_47 (Length: 401)
Name: NF1946_high_47
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_high_47 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 91 - 387
Target Start/End: Complemental strand, 4236452 - 4236155
Alignment:
| Q |
91 |
aatctcattgaaaatgtggtagaatccgataagaactatccgaatatggaca-cgataactagtagtttcactcttcatattatagatcttcaatctatt |
189 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4236452 |
aatctcattgaaaatgtggtagaatccaataagaactatccgaatatggacaacgataactaacagtttcactcttcatattatagatcttcaatatatt |
4236353 |
T |
|
| Q |
190 |
agcaaagtacattgagtctctttgctgagaattagagaaatatgacgcagacacataaatagaatctccgactcctaaaaataaaatgttatctcccaaa |
289 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4236352 |
agcaaagtacattgagtctctttactgagaattagagaaatatgacgccgacacagaaatagaatctccggctcctaaaaataaaatgttatctcccaaa |
4236253 |
T |
|
| Q |
290 |
ctcttgaattcaaacatgtgttcaagcttctcacttttggcatctagtttcaatttgtacacaaggaatgtactcatattcttgttagaccttcttac |
387 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
4236252 |
ctcttgagttcaaacatgtgttcaagcttctcacttttggcatctagtttcaatttgtacacaaggaatgtactcatattcttgtcagaccttcttac |
4236155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 93 - 387
Target Start/End: Complemental strand, 49146020 - 49145725
Alignment:
| Q |
93 |
tctcattgaaaatgtggtagaatccgataagaactatccgaatatggaca-cgataactagtagtttcactcttcatattatagatcttcaatctattag |
191 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||| | || ||||| |||||||||| | | ||||||||||||||||||||||||||| ||||| |
|
|
| T |
49146020 |
tctcattgaaaatgtggtagaatccaataagggctatcccagtacggacaacgataactagcggctccactcttcatattatagatcttcaatccattag |
49145921 |
T |
|
| Q |
192 |
caaagtacattgagtctctttgctgagaattagagaaatatgacgcagacacataaatagaatctccgactcctaaaaataaaatgttatctcccaaact |
291 |
Q |
| |
|
||||||| ||||||||||| ||| ||| |||||||||| ||| || |||||| |||| ||||| || |||||| |||||||||||||||||||||||| |
|
|
| T |
49145920 |
caaagtaaattgagtctctctgcaaagatttagagaaatgtgatgccgacacagaaattgaatcaccagctcctacaaataaaatgttatctcccaaact |
49145821 |
T |
|
| Q |
292 |
cttgaattcaaacatgtgttcaagcttctcacttttggcatctagtttcaatttgtacacaaggaatgtactcatattcttgttagaccttcttac |
387 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||| |||| || ||| | |||||||||| |
|
|
| T |
49145820 |
cttgagttcaaacatgtgttcaagcttctcacttttgacatctagtttcaatttatatacaaggaatgtacacatactcgtgtcacaccttcttac |
49145725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 262 - 364
Target Start/End: Complemental strand, 49150282 - 49150181
Alignment:
| Q |
262 |
tcctaaaaataaaatgttatctcccaaactcttgaattcaaacatgtgttcaagcttctcacttttggcatctagtttcaatttgtacacaaggaatgta |
361 |
Q |
| |
|
|||||||||||||||||||||| ||||||| | | || || ||| | ||||||||| |||||||||||| ||||||||||||||| ||| ||||| || |
|
|
| T |
49150282 |
tcctaaaaataaaatgttatcttccaaacttgtaagtttaagcatttcttcaagcttttcacttttggca-atagtttcaatttgtatacatggaatata |
49150184 |
T |
|
| Q |
362 |
ctc |
364 |
Q |
| |
|
||| |
|
|
| T |
49150183 |
ctc |
49150181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University