View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1946_high_54 (Length: 379)
Name: NF1946_high_54
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_high_54 |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 1e-94; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 71 - 254
Target Start/End: Original strand, 10673422 - 10673605
Alignment:
| Q |
71 |
aatatcttaaaatacattgttagaatcacattctggtaatgtattttgacattgttgcttgaaactcacgttcatgactagaattcaatgctagtaaaag |
170 |
Q |
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| T |
10673422 |
aatatcttaaaatacattgttagaatcacattaaggtaatgtattttgacattgttgcttgaaactcacgttcatgactagaattcaatgctagtaaaag |
10673521 |
T |
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| Q |
171 |
gattgagctaaatataaaaagaatcacacaaataagtttttagaagaaaaggttattaattcccaacataacagattatgtatc |
254 |
Q |
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| T |
10673522 |
gattgagctaaatataaaaagaatcacacaaataagtttttagaagaaaaggttattaattcccaacataacagattatgtatc |
10673605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 297 - 364
Target Start/End: Original strand, 10673649 - 10673716
Alignment:
| Q |
297 |
acataaattatggagttggatcttgtcttgagaataaagttcaaatggtgtcaatgatattctcattg |
364 |
Q |
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| T |
10673649 |
acataaattatggagttggatcttgtcttgagaataaagttcaaatggtgtcaatgatattctcattg |
10673716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 49
Target Start/End: Original strand, 10673371 - 10673404
Alignment:
| Q |
16 |
atgtgggagtttatctgaagcatgcttccaatag |
49 |
Q |
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| T |
10673371 |
atgtgggagtttatctgaagcatgcttccaatag |
10673404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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