View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1946_high_55 (Length: 374)
Name: NF1946_high_55
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_high_55 |
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Alignment Details
Target: chr6 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 25 - 361
Target Start/End: Original strand, 11625632 - 11625969
Alignment:
| Q |
25 |
ctcacacattcaatcactcacgttcactctcctatatatactctctctttctcacgtagggttacaaaagctgctcctttcacattttgagcaaatactc |
124 |
Q |
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|||||||||||||||||||||||||||| |||||||||||| ||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
11625632 |
ctcacacattcaatcactcacgttcactttcctatatataccctctcattctcacttagggttacaaaaactgctcctttcacattttgagcaaatactc |
11625731 |
T |
|
| Q |
125 |
acgtactttccctcaactcccatgtaaccaaaagcttgaaaccatgagtcaggcaccaactagatgcaccgtcagtgcatctgttggagatctgatgcta |
224 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |
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| T |
11625732 |
acgtactttccctcaactcccatgtaaccaaaagcttgaaaccatgagtcaggcaacaactagatgcaccgtcagtgcatctgttggagatctgatgcga |
11625831 |
T |
|
| Q |
225 |
caaagatttttgatggtgacttttgtatctttaccatcaaagataattttattatttcatcgagtgtaatttccttga-taattcagtctcttaatcgag |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
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| T |
11625832 |
caaagatttttgatggtgacttttgtatctttaccatcaaagataattttattatttcatcgagtgtaatttccttgattaattcactctcttaatcgag |
11625931 |
T |
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| Q |
324 |
agtagtaacgggctaaaagtctaacaagggttctctgt |
361 |
Q |
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| T |
11625932 |
agtagtaactggctaaaagtctaacaagggttctctgt |
11625969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 158 - 262
Target Start/End: Original strand, 31049947 - 31050051
Alignment:
| Q |
158 |
gcttgaaaccatgagtcaggcaccaactagatgcaccgtcagtgcatctgttggagatctgatgctacaaagatttttgatggtgacttttgtatcttta |
257 |
Q |
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| T |
31049947 |
gcttgaaacgatgagtcaaacaacaactagattctctattaatgcatctgttggagatctgatgattcaaagaatgttgatggtgacttctatatcttta |
31050046 |
T |
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| Q |
258 |
ccatc |
262 |
Q |
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||||| |
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| T |
31050047 |
ccatc |
31050051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 198 - 262
Target Start/End: Original strand, 31039971 - 31040035
Alignment:
| Q |
198 |
agtgcatctgttggagatctgatgctacaaagatttttgatggtgacttttgtatctttaccatc |
262 |
Q |
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| T |
31039971 |
agtgcatctgttggagatctgatgattcaaagaatgttgatggtgacttctatatgtttaccatc |
31040035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 303
Target Start/End: Complemental strand, 21185321 - 21185285
Alignment:
| Q |
267 |
ataattttattatttcatcgagtgtaatttccttgat |
303 |
Q |
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| T |
21185321 |
ataattttattatttcatcgagtgtgatttccttgat |
21185285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 256
Target Start/End: Original strand, 31046135 - 31046195
Alignment:
| Q |
196 |
tcagtgcatctgttggagatctgatgctacaaagatttttgatggtgacttttgtatcttt |
256 |
Q |
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||||||||| ||||| ||||||||||||||||| || |||||| ||||||| | ||||||| |
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| T |
31046135 |
tcagtgcatatgttgtagatctgatgctacaaatatctttgattgtgacttctatatcttt |
31046195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 31015595 - 31015639
Alignment:
| Q |
206 |
tgttggagatctgatgctacaaagatttttgatggtgacttttgt |
250 |
Q |
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| T |
31015595 |
tgttggagatctgatgctacaaagatcgatgaaggtgacttttgt |
31015639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 303
Target Start/End: Complemental strand, 50968819 - 50968789
Alignment:
| Q |
273 |
ttattatttcatcgagtgtaatttccttgat |
303 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
50968819 |
ttattatttcatcgagtgtaatttccttgat |
50968789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 303
Target Start/End: Complemental strand, 50970931 - 50970901
Alignment:
| Q |
273 |
ttattatttcatcgagtgtaatttccttgat |
303 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
50970931 |
ttattatttcatcgagtgtaatttccttgat |
50970901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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