View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1946_high_62 (Length: 367)
Name: NF1946_high_62
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_high_62 |
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Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 39 - 359
Target Start/End: Original strand, 45970149 - 45970470
Alignment:
| Q |
39 |
atgcaaatctccacgaaaatgttggcattatttggttcatttctcccagtgttgtcaaacggctgttatagcagcattacagtactaaagcgttaagaga |
138 |
Q |
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| T |
45970149 |
atgcaaatctccacgaaaatgttggcattatttggttcatttctcccagtgttgtcaaacggctgttatagcagcattacagtactaaagcgttaagaga |
45970248 |
T |
|
| Q |
139 |
attagaacatattgctctttttccgtgatacactatttagtaaaaaactcgaataaggttcacagtagcgccgcaatagcaggaacaatattcactgtga |
238 |
Q |
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| T |
45970249 |
attagaacatattgctctttttccgtgaaacactatttagtaaaaaactcgaataaggttcacagtagcgccgcaatagcaggaacaatattcactgtga |
45970348 |
T |
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| Q |
239 |
acctaaatagcatgtcgcgtaacataattttaatgtagcgctattgataagagtttggtaacagtgatttcttccttaataa-gttcacggtattaacat |
337 |
Q |
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|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||| |
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| T |
45970349 |
acctaaatagcatgccgcgtaacataattttaatgtagcactattgataagagtttggttacagttatttcttccttaataaggttcacggtattaacat |
45970448 |
T |
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| Q |
338 |
cctgaccaatggtacctatgct |
359 |
Q |
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|||||||||||||||||||||| |
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| T |
45970449 |
cctgaccaatggtacctatgct |
45970470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 45 - 359
Target Start/End: Original strand, 45974690 - 45975006
Alignment:
| Q |
45 |
atctccacgaaaatgttggcattatttggttcatttctcccagtgttgtcaaacggctgttatagcagcattacagtactaaagcgttaagagaattaga |
144 |
Q |
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||||||| |||| |||||||| ||||||||||||||||| ||||||||||||| ||| ||||||||| ||| || || ||| | ||||||||| || |
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| T |
45974690 |
atctccataaaaaagttggcatcatttggttcatttctccgagtgttgtcaaacaactgctatagcagcgtta--gtcttatagcat-aagagaatttga |
45974786 |
T |
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| Q |
145 |
acatattgctctttttccgtgatacactatttagtaaaaaact----cgaataaggttcacagtagcgccgcaatagcaggaacaatattcactgtgaac |
240 |
Q |
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||||||||||||||||||||||||| |||||| |||||||||| | |||||| |||| ||||||||| | ||||||||| || |||| ||||||| |
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| T |
45974787 |
acatattgctctttttccgtgatacgctattttgtaaaaaactttgtcaaataagattcatagtagcgcccctgtagcaggaaaaaggttcaatgtgaac |
45974886 |
T |
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| Q |
241 |
ctaaatagcatgtcgcgtaacataattttaatgtagcgctattgataagagtttggtaacagtgatttcttccttaataa-gttcacggtattaacatcc |
339 |
Q |
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|||||||||||||||||||||| |||||||| |||| |||||| | || ||||| |||||||| ||||| ||||||||| ||||||||||||||||||| |
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| T |
45974887 |
ctaaatagcatgtcgcgtaacagaattttaacatagcactattgttcagcgtttgataacagtggtttctcccttaataaggttcacggtattaacatcc |
45974986 |
T |
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| Q |
340 |
tgaccaatggtacctatgct |
359 |
Q |
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||||| |||| ||||||||| |
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| T |
45974987 |
tgacctatggcacctatgct |
45975006 |
T |
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