View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1946_high_69 (Length: 347)
Name: NF1946_high_69
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_high_69 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 14 - 347
Target Start/End: Complemental strand, 38910507 - 38910173
Alignment:
| Q |
14 |
atataaaactaaaaaatcaaccattctattnnnnnnntgagtgggggactacgaacattcataaagatcaagcgataaggatgtcacgacaaaagaaaaa |
113 |
Q |
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| T |
38910507 |
atataaaactaaaaaatcaaccattctattaaaaaaatgagtgggggactacgaacattcataaagatcaagcgataaggatgtcacgacaaaagaaaaa |
38910408 |
T |
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| Q |
114 |
tggaggaatacgagttagggctacaaaattagaaagggttaaacctcgggggcttaaatggttcaaaatatcaagtgaaaatcgtgcaatggaaatacta |
213 |
Q |
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| T |
38910407 |
tggagaaatacgagttagggctacaaaattagaaagggttaaacctcggaggcttaaatggttcaaaatatcaggtgaaaatcatgcaatggaaatacta |
38910308 |
T |
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| Q |
214 |
agagagttaaaactagaattaagcatataatatgttaagttatcatatcata-tgaatccattttattataagttattctcacgaacatagttaaattga |
312 |
Q |
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| T |
38910307 |
agagagttaaaactagaattaagcatataatatgttaagttatcctatcatattgaatccattttattataagttatcctcacgaacatagttaaattga |
38910208 |
T |
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| Q |
313 |
taatgacattgcaatttacaaggttgaggtttaaa |
347 |
Q |
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| T |
38910207 |
taatgacattgcaatttacagggttgaggtttaaa |
38910173 |
T |
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