View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1946_high_81 (Length: 320)
Name: NF1946_high_81
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_high_81 |
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Alignment Details
Target: chr8 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 15 - 189
Target Start/End: Original strand, 41652901 - 41653074
Alignment:
| Q |
15 |
gagggcaattttaataacgagtaaacttcattttgaacctaattccaaatttccattaagaaacatgaaataaacgctgaaaaaatatccaagaatttaa |
114 |
Q |
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| T |
41652901 |
gagggcaattttaataacgagtaaacttcattttgaacctaattccaaatttccattaagaaacatgaaatgaacgcggataaaatatccaagaatttaa |
41653000 |
T |
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| Q |
115 |
ttaacttcaccaaacaaaacttcacacataatgttaaatgcgaagtattattcatttttgaataaaggctccaca |
189 |
Q |
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| T |
41653001 |
ttaacttcaccaaacaaaacttcacacataatgttaaatgcgaagcattattcaattttgaat-aaggctccaca |
41653074 |
T |
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Target: chr8; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 251 - 302
Target Start/End: Original strand, 41653155 - 41653206
Alignment:
| Q |
251 |
ggtaataattagctgaaaacaatgatttagccaattaattaattaccaacat |
302 |
Q |
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| T |
41653155 |
ggtaataattagctgaaaacaatgatttagccaattaattaattaccaacat |
41653206 |
T |
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