View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1946_high_84 (Length: 319)
Name: NF1946_high_84
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_high_84 |
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Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 706014 - 705692
Alignment:
| Q |
1 |
ccgattcgatgccgttttgaatatgattcgacagcatcgtcgttggtcgatcggatccaaaactcaaaatgagaatctcaaaaagtgcgtttggattaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
706014 |
ccgattcgatgccgttttgaatatgattcgacagcatcgtcgttggtcgatcggatccaaaactcaaaatgagaatctcaaaaagtgcgtttggattaag |
705915 |
T |
|
| Q |
101 |
ttgtgtttggtagaattaatcgcgttttgttgttaaaagtatccaccacagctaacagtgtcgttcgttcacgactctattcctcttttttgattgtgcg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
705914 |
ttgtgtttggtagaattaatcgcgttttgttgttaaaagtatccaccacagctaacagtgtcgttcgttcacgactctattcctcttttgtgattgtgcg |
705815 |
T |
|
| Q |
201 |
ttcttctttattactcagaaagaaagaa--------agaattgaggttccaaacatgtatgtgcgggtgaagaatcgtttttcttgttgacgtggcgcat |
292 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
705814 |
ttcttctttattactcagaaagaaagaaagaaagaaagaattgaggttccaaacatgtatgtgcgggtgaagaatcgtttttcttgttgacgtggcgcat |
705715 |
T |
|
| Q |
293 |
ttaagagtttccaatcttctgtg |
315 |
Q |
| |
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|||||||||||||||||| |||| |
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| T |
705714 |
ttaagagtttccaatcttatgtg |
705692 |
T |
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