View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1946_high_99 (Length: 300)

Name: NF1946_high_99
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1946_high_99
NF1946_high_99
[»] chr3 (23 HSPs)
chr3 (1-179)||(49579136-49579314)
chr3 (170-296)||(49579328-49579460)
chr3 (12-89)||(3354920-3354997)
chr3 (18-89)||(43902534-43902604)
chr3 (12-89)||(33687949-33688026)
chr3 (12-84)||(33687611-33687683)
chr3 (15-89)||(15311841-15311914)
chr3 (12-90)||(16883492-16883570)
chr3 (12-89)||(16883769-16883846)
chr3 (12-88)||(26465970-26466047)
chr3 (12-85)||(3354755-3354828)
chr3 (13-89)||(33381511-33381588)
chr3 (17-88)||(12921450-12921521)
chr3 (18-89)||(50420862-50420933)
chr3 (22-56)||(1807645-1807679)
chr3 (18-88)||(43902807-43902877)
chr3 (19-90)||(51453543-51453613)
chr3 (22-88)||(12921716-12921782)
chr3 (19-57)||(47284533-47284571)
chr3 (19-89)||(53255266-53255336)
chr3 (19-57)||(54716748-54716786)
chr3 (19-56)||(17258172-17258209)
chr3 (19-56)||(40988633-40988670)
[»] chr7 (24 HSPs)
chr7 (12-90)||(27756266-27756344)
chr7 (12-89)||(35793377-35793454)
chr7 (12-89)||(35828351-35828428)
chr7 (19-89)||(9477432-9477502)
chr7 (18-88)||(24432636-24432705)
chr7 (18-78)||(47030288-47030348)
chr7 (15-89)||(28960650-28960722)
chr7 (19-88)||(9477136-9477205)
chr7 (13-62)||(43657831-43657880)
chr7 (12-64)||(967652-967704)
chr7 (12-88)||(44565266-44565342)
chr7 (19-89)||(30283408-30283478)
chr7 (20-89)||(24432338-24432407)
chr7 (205-265)||(9907094-9907154)
chr7 (29-89)||(21939326-21939386)
chr7 (12-67)||(15327726-15327780)
chr7 (29-88)||(46265868-46265927)
chr7 (24-75)||(47113363-47113414)
chr7 (19-53)||(24679086-24679120)
chr7 (19-88)||(6792038-6792107)
chr7 (19-100)||(7873500-7873581)
chr7 (12-57)||(43724596-43724641)
chr7 (29-89)||(3318320-3318380)
chr7 (24-88)||(9500149-9500213)
[»] scaffold1088 (1 HSPs)
scaffold1088 (12-88)||(2105-2180)
[»] scaffold0006 (1 HSPs)
scaffold0006 (12-90)||(162278-162356)
[»] chr5 (25 HSPs)
chr5 (12-88)||(20986949-20987025)
chr5 (18-90)||(36501403-36501473)
chr5 (12-89)||(38498121-38498198)
chr5 (18-89)||(37426695-37426765)
chr5 (22-88)||(36628671-36628737)
chr5 (25-89)||(20364684-20364748)
chr5 (13-88)||(12167100-12167175)
chr5 (22-89)||(38944178-38944245)
chr5 (19-89)||(11167875-11167945)
chr5 (221-270)||(4873488-4873537)
chr5 (13-67)||(37426436-37426490)
chr5 (35-90)||(16644976-16645031)
chr5 (29-88)||(42169087-42169146)
chr5 (28-89)||(34605-34663)
chr5 (43-89)||(2427034-2427080)
chr5 (19-89)||(6464317-6464387)
chr5 (19-57)||(10169049-10169087)
chr5 (19-57)||(16039742-16039780)
chr5 (43-89)||(20369402-20369448)
chr5 (18-56)||(22408787-22408825)
chr5 (24-86)||(36400470-36400532)
chr5 (29-82)||(36898642-36898696)
chr5 (17-82)||(14189673-14189738)
chr5 (29-90)||(18159713-18159774)
chr5 (215-272)||(33531083-33531140)
[»] chr1 (31 HSPs)
chr1 (12-88)||(13574818-13574896)
chr1 (15-88)||(31651337-31651409)
chr1 (12-88)||(1484658-1484734)
chr1 (18-90)||(39411894-39411964)
chr1 (22-89)||(10532217-10532283)
chr1 (12-89)||(29816121-29816195)
chr1 (12-90)||(10532492-10532570)
chr1 (18-88)||(29816413-29816482)
chr1 (14-81)||(10231113-10231180)
chr1 (12-90)||(13575137-13575214)
chr1 (19-89)||(37008219-37008289)
chr1 (15-80)||(31651643-31651708)
chr1 (12-89)||(51690435-51690512)
chr1 (12-80)||(1484381-1484449)
chr1 (13-69)||(22347539-22347595)
chr1 (12-71)||(39411604-39411662)
chr1 (18-88)||(83893-83963)
chr1 (12-88)||(6940901-6940975)
chr1 (19-88)||(31907934-31908003)
chr1 (215-272)||(52575555-52575612)
chr1 (19-54)||(367161-367196)
chr1 (12-90)||(84255-84332)
chr1 (19-89)||(7196953-7197023)
chr1 (19-57)||(13344417-13344455)
chr1 (19-89)||(40345572-40345642)
chr1 (12-89)||(39384562-39384639)
chr1 (225-270)||(43702718-43702763)
chr1 (17-82)||(50379956-50380021)
chr1 (29-89)||(1096469-1096529)
chr1 (29-89)||(5287826-5287886)
chr1 (221-265)||(12268208-12268252)
[»] chr8 (24 HSPs)
chr8 (13-90)||(29219359-29219436)
chr8 (12-89)||(4694989-4695067)
chr8 (15-89)||(9498911-9498985)
chr8 (12-89)||(9234715-9234792)
chr8 (12-88)||(34232761-34232835)
chr8 (19-89)||(8409807-8409876)
chr8 (19-89)||(45522433-45522503)
chr8 (12-89)||(5899514-5899591)
chr8 (19-96)||(29919070-29919146)
chr8 (18-81)||(29219086-29219149)
chr8 (15-88)||(2044678-2044750)
chr8 (33-90)||(4461675-4461732)
chr8 (18-90)||(5899210-5899283)
chr8 (215-287)||(12112091-12112162)
chr8 (12-88)||(18929305-18929381)
chr8 (33-88)||(2802651-2802706)
chr8 (43-90)||(9499223-9499270)
chr8 (19-57)||(7477371-7477409)
chr8 (19-89)||(14170424-14170494)
chr8 (19-56)||(5645767-5645804)
chr8 (12-57)||(7658826-7658871)
chr8 (19-88)||(25896993-25897062)
chr8 (19-56)||(29196604-29196641)
chr8 (19-88)||(29340771-29340840)
[»] chr4 (28 HSPs)
chr4 (12-89)||(3369849-3369926)
chr4 (12-89)||(30627008-30627085)
chr4 (13-90)||(33090527-33090603)
chr4 (18-90)||(16322978-16323050)
chr4 (12-88)||(49000598-49000673)
chr4 (205-283)||(23125839-23125917)
chr4 (14-88)||(30626587-30626660)
chr4 (19-89)||(53831154-53831224)
chr4 (18-89)||(11787065-11787135)
chr4 (18-89)||(11799232-11799302)
chr4 (12-83)||(54953732-54953801)
chr4 (12-61)||(33122853-33122902)
chr4 (12-59)||(15845162-15845209)
chr4 (19-57)||(26858378-26858416)
chr4 (19-89)||(30064004-30064074)
chr4 (29-67)||(45917584-45917622)
chr4 (225-283)||(48087297-48087354)
chr4 (221-270)||(229943-229992)
chr4 (12-89)||(1096534-1096611)
chr4 (20-81)||(5303781-5303842)
chr4 (17-82)||(9180654-9180719)
chr4 (44-89)||(13826280-13826325)
chr4 (19-88)||(47742234-47742303)
chr4 (19-88)||(47742586-47742655)
chr4 (12-45)||(48188326-48188359)
chr4 (19-56)||(49804338-49804375)
chr4 (12-89)||(55038155-55038232)
chr4 (29-89)||(23759825-23759885)
[»] chr6 (17 HSPs)
chr6 (12-88)||(1894717-1894791)
chr6 (12-95)||(2164692-2164775)
chr6 (12-95)||(2176325-2176408)
chr6 (13-81)||(1615034-1615103)
chr6 (21-89)||(30369786-30369853)
chr6 (12-71)||(12101692-12101751)
chr6 (12-89)||(2164422-2164498)
chr6 (12-89)||(2176055-2176131)
chr6 (21-89)||(15139574-15139642)
chr6 (12-67)||(1614838-1614893)
chr6 (19-56)||(12799034-12799071)
chr6 (19-90)||(499346-499417)
chr6 (19-89)||(2538985-2539054)
chr6 (19-57)||(2840823-2840861)
chr6 (19-57)||(12730577-12730615)
chr6 (18-67)||(1894472-1894521)
chr6 (29-89)||(8223982-8224042)
[»] chr2 (18 HSPs)
chr2 (12-88)||(23993894-23993970)
chr2 (12-90)||(35125158-35125235)
chr2 (12-89)||(23993725-23993801)
chr2 (12-89)||(14289268-14289344)
chr2 (18-87)||(31226855-31226924)
chr2 (12-88)||(31227123-31227199)
chr2 (19-89)||(9780927-9780997)
chr2 (12-89)||(10522645-10522722)
chr2 (19-88)||(29370719-29370788)
chr2 (19-56)||(35500333-35500370)
chr2 (14-69)||(3198477-3198532)
chr2 (18-89)||(13491481-13491550)
chr2 (19-89)||(14816039-14816109)
chr2 (19-89)||(14983942-14984012)
chr2 (19-57)||(35180527-35180565)
chr2 (19-57)||(37343686-37343724)
chr2 (215-272)||(16870207-16870264)
chr2 (221-270)||(43994369-43994418)
[»] scaffold0286 (2 HSPs)
scaffold0286 (12-95)||(17634-17717)
scaffold0286 (12-89)||(17911-17987)
[»] scaffold0010 (1 HSPs)
scaffold0010 (12-88)||(128150-128226)
[»] scaffold0172 (2 HSPs)
scaffold0172 (18-89)||(9878-9948)
scaffold0172 (12-56)||(9580-9624)
[»] scaffold0092 (1 HSPs)
scaffold0092 (12-89)||(37786-37862)
[»] scaffold0400 (1 HSPs)
scaffold0400 (13-47)||(8581-8615)
[»] scaffold0365 (1 HSPs)
scaffold0365 (13-47)||(9224-9258)
[»] scaffold0047 (2 HSPs)
scaffold0047 (19-57)||(63069-63107)
scaffold0047 (19-57)||(63305-63343)
[»] scaffold0025 (1 HSPs)
scaffold0025 (12-90)||(151600-151677)


Alignment Details
Target: chr3 (Bit Score: 159; Significance: 1e-84; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 49579136 - 49579314
Alignment:
Q  1 attacacatgtggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaagtataaaataaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  49579136 attacacatgtggctgaattgtattttattttgttaggggactaaaatcgcaactttctgatacttaaggggtcaaaactgctattaagcataaaataaa 49579235  T
Q  101 acactataaagctcttaaaatatgagttgaaagaccatctacaatatagtcctctattaggtgcttaattgagtcatat 179  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  49579236 acactataaagttcttaaaatatgagttgaaagaccatttacaatatagtcctctattaggtgcttaattgagtcatat 49579314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 170 - 296
Target Start/End: Original strand, 49579328 - 49579460
Alignment:
Q  170 tgagtcatattaataattttacacatcatctcagcaaa------acttattaaatgaatcctattaataacttaatgttattgtatgtcaataaagttta 263  Q
    ||||||||||||||||||||| ||||||||||||||||      | |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  49579328 tgagtcatattaataattttaaacatcatctcagcaaagttaaaaattattaaatgaatcctattaataactcaatgttattgtatgtcaataaagttta 49579427  T
Q  264 ttaattttttatacaatttaataagcttgtctc 296  Q
    |||||||||||||||||||||||| ||||||||    
T  49579428 ttaattttttatacaatttaataaacttgtctc 49579460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 89
Target Start/End: Original strand, 3354920 - 3354997
Alignment:
Q  12 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 89  Q
    ||||| |||||||||||||||||||||||||||||||||||||||  | ||||||| |||| |||| |||||||||||    
T  3354920 ggctggattgtattttattttgttaggggaccaaaatcgcaacttcttgatacttagggggccaaatctgctattaag 3354997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 43902604 - 43902534
Alignment:
Q  18 attgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 89  Q
    ||||||||||||||||||| ||| |||||||| |||||| ||||||||||||||||| ||||||||||||||    
T  43902604 attgtattttattttgttaaggggccaaaatcacaacttcctaatacttaaggggtc-aaactgctattaag 43902534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 89
Target Start/End: Original strand, 33687949 - 33688026
Alignment:
Q  12 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 89  Q
    |||||||||||||||||||||||||||||  || |||||||||||||| |||||||  | | ||||||||||||||||    
T  33687949 ggctgaattgtattttattttgttagggggtcagaatcgcaactttctgatacttagagagccaaaactgctattaag 33688026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 84
Target Start/End: Complemental strand, 33687683 - 33687611
Alignment:
Q  12 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgcta 84  Q
    ||||| ||||||||||||||||||||||| | |||||||||||||||| ||||||| |||| ||||| |||||    
T  33687683 ggctggattgtattttattttgttagggggctaaaatcgcaactttctgatacttagggggccaaaaatgcta 33687611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 89
Target Start/End: Complemental strand, 15311914 - 15311841
Alignment:
Q  15 tgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 89  Q
    |||||||||||||||||||||||||| ||||||| |||||||  |||||||||  || |||||||||||||||||    
T  15311914 tgaattgtattttattttgttagggg-ccaaaattgcaacttcataatacttagaggatcaaaactgctattaag 15311841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 90
Target Start/End: Complemental strand, 16883570 - 16883492
Alignment:
Q  12 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaagt 90  Q
    ||||||||| |||||||||||||||| ||  ||||||| |||||| || ||||||| ||||||||||||| ||||||||    
T  16883570 ggctgaattatattttattttgttagagggtcaaaatcacaacttcctgatacttagggggtcaaaactgttattaagt 16883492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 12 - 89
Target Start/End: Original strand, 16883769 - 16883846
Alignment:
Q  12 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 89  Q
    ||||| ||||||||||| |||||||||||  ||||||||||||||||| ||||||| |||| ||||| | ||||||||    
T  16883769 ggctggattgtattttaatttgttagggggtcaaaatcgcaactttctgatacttagggggccaaaaatactattaag 16883846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 26466047 - 26465970
Alignment:
Q  12 ggctgaattgtattttattttgtta-ggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaa 88  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||  |||||||||  ||||||||| || ||||||    
T  26466047 ggctgaattgtattttattttgttaggggggccaaaatcgcaacttcataatacttagtgggtcaaaaatgatattaa 26465970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 3354828 - 3354755
Alignment:
Q  12 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctat 85  Q
    ||||| ||||||||||||||| ||||| | |||||||||||| || || ||||||| |||| ||||||||||||    
T  3354828 ggctggattgtattttattttcttaggaggccaaaatcgcaatttcctgatacttagggggccaaaactgctat 3354755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 89
Target Start/End: Complemental strand, 33381588 - 33381511
Alignment:
Q  13 gctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatactta-aggggtcaaaactgctattaag 89  Q
    |||||||||||||||||||||||| |||  |||||| ||||||| ||||||||||  |||| || |||||||||||||    
T  33381588 gctgaattgtattttattttgttaaggggtcaaaattgcaacttcctaatacttaggggggccataactgctattaag 33381511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 12921521 - 12921450
Alignment:
Q  17 aattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaa 88  Q
    |||| |||||||||||||||| ||  |||||| ||| ||||||||||||||  |||||||||| ||||||||    
T  12921521 aattttattttattttgttagagggtcaaaattgcatctttctaatacttagagggtcaaaacggctattaa 12921450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 50420862 - 50420933
Alignment:
Q  18 attgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 89  Q
    ||||| ||||||||||||| |||  ||||||||||||||  ||||||||| | || ||||||||||||||||    
T  50420862 attgtgttttattttgttaaggggtcaaaatcgcaacttcataatacttaggaggccaaaactgctattaag 50420933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 56
Target Start/End: Original strand, 1807645 - 1807679
Alignment:
Q  22 tattttattttgttaggggaccaaaatcgcaactt 56  Q
    |||||||||||||||||||||||||||||||||||    
T  1807645 tattttattttgttaggggaccaaaatcgcaactt 1807679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 43902807 - 43902877
Alignment:
Q  18 attgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaa 88  Q
    |||||||||||||||||||||||    |||| ||||||||||||||||||| ||   ||||||||||||||    
T  43902807 attgtattttattttgttagggggttgaaattgcaactttctaatacttaaaggactaaaactgctattaa 43902877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 51453613 - 51453543
Alignment:
Q  19 ttgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaagt 90  Q
    ||||| ||||||| ||||||||  ||||||||||||||  ||| || || ||||||||||||||||||||||    
T  51453613 ttgtagtttatttagttagggggtcaaaatcgcaacttcttaaaacata-ggggtcaaaactgctattaagt 51453543  T

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Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 88
Target Start/End: Original strand, 12921716 - 12921782
Alignment:
Q  22 tattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaa 88  Q
    ||||||||||| ||||  | ||||||| ||| ||||||||||||||  ||||||||| |||||||||    
T  12921716 tattttattttattagaaggccaaaattgcatctttctaatacttagagggtcaaaagtgctattaa 12921782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 47284533 - 47284571
Alignment:
Q  19 ttgtattttattttgttaggggaccaaaatcgcaacttt 57  Q
    |||||||||| || |||||||||||||||||||||||||    
T  47284533 ttgtattttaattagttaggggaccaaaatcgcaacttt 47284571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 53255266 - 53255336
Alignment:
Q  19 ttgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 89  Q
    ||||| ||||||| |||||||| |||||||||||||||  ||| || || | || ||||||||||||||||    
T  53255266 ttgtagtttatttagttagggggccaaaatcgcaacttcttaaaacataggaggccaaaactgctattaag 53255336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 54716748 - 54716786
Alignment:
Q  19 ttgtattttattttgttaggggaccaaaatcgcaacttt 57  Q
    |||||||||| || |||||||||||||||||||||||||    
T  54716748 ttgtattttaattagttaggggaccaaaatcgcaacttt 54716786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 17258172 - 17258209
Alignment:
Q  19 ttgtattttattttgttaggggaccaaaatcgcaactt 56  Q
    |||||||||| ||||||||||| |||||||||||||||    
T  17258172 ttgtattttaatttgttaggggtccaaaatcgcaactt 17258209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 40988670 - 40988633
Alignment:
Q  19 ttgtattttattttgttaggggaccaaaatcgcaactt 56  Q
    |||||||||| || ||||||||||||||||||||||||    
T  40988670 ttgtattttaattagttaggggaccaaaatcgcaactt 40988633  T

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Target: chr7 (Bit Score: 59; Significance: 5e-25; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 12 - 90
Target Start/End: Complemental strand, 27756344 - 27756266
Alignment:
Q  12 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaagt 90  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||  ||||||||||||||| |||||||||||||||||    
T  27756344 ggctggattgtattttattttgttagggggccaaaatcgcaactacctaatacttaaggggccaaaactgctattaagt 27756266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 89
Target Start/End: Complemental strand, 35793454 - 35793377
Alignment:
Q  12 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 89  Q
    ||||||||||||||||||||||||||||| | ||||||||||||| |||| | ||| |||| ||||||||||||||||    
T  35793454 ggctgaattgtattttattttgttaggggcctaaaatcgcaacttcctaaaatttagggggccaaaactgctattaag 35793377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 89
Target Start/End: Complemental strand, 35828428 - 35828351
Alignment:
Q  12 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 89  Q
    |||||||||||||||| |||||||||| |  ||||||||||||||||| ||| ||||| |||||||||||||||||||    
T  35828428 ggctgaattgtattttgttttgttaggaggtcaaaatcgcaactttctgatatttaagaggtcaaaactgctattaag 35828351  T

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Target: chr7; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 9477432 - 9477502
Alignment:
Q  19 ttgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 89  Q
    |||||||||||||||||||||| |||||||||||||||| ||| || || | |||||||||||||||||||    
T  9477432 ttgtattttattttgttagggggccaaaatcgcaactttttaaaacataggaggtcaaaactgctattaag 9477502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 24432636 - 24432705
Alignment:
Q  18 attgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaa 88  Q
    |||||||||||||||||||| |  ||||||||||||||  ||||||||||||||| |||||||||||||||    
T  24432636 attgtattttattttgttagtgagccaaaatcgcaactc-ctaatacttaaggggccaaaactgctattaa 24432705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 47030348 - 47030288
Alignment:
Q  18 attgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaa 78  Q
    ||||||||||||||||||| |||| ||||||||||||||||| ||||||| ||| ||||||    
T  47030348 attgtattttattttgttatgggatcaaaatcgcaactttcttatacttaggggatcaaaa 47030288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 89
Target Start/End: Complemental strand, 28960722 - 28960650
Alignment:
Q  15 tgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 89  Q
    |||||||||||||||||||||| |||||||||||| ||||||  | |||||| ||||| ||||||||||||||||    
T  28960722 tgaattgtattttattttgtta-gggaccaaaatcacaacttcttgatactt-aggggccaaaactgctattaag 28960650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 9477205 - 9477136
Alignment:
Q  19 ttgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaa 88  Q
    |||||||||||||||||| ||| | |||||||||||||| ||| || || |||| |||||||||||||||    
T  9477205 ttgtattttattttgttaaggggctaaaatcgcaactttttaaaacatagggggccaaaactgctattaa 9477136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 43657831 - 43657880
Alignment:
Q  13 gctgaattgtattttattttgttaggggaccaaaatcgcaactttctaat 62  Q
    |||||||||||||||||||||||||||  ||||||||||||||| |||||    
T  43657831 gctgaattgtattttattttgttagggtgccaaaatcgcaacttcctaat 43657880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 967652 - 967704
Alignment:
Q  12 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatac 64  Q
    |||||||||||||||||||||||||| |||| |||||| ||||||||| ||||    
T  967652 ggctgaattgtattttattttgttagaggactaaaatcacaactttctgatac 967704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 44565342 - 44565266
Alignment:
Q  12 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaa 88  Q
    ||||||||| | ||||||||||||||| | ||||||| |||||||  ||||||||| |||||||||| | |||||||    
T  44565342 ggctgaattattttttattttgttaggaggccaaaattgcaacttcataatacttagggggtcaaaaatactattaa 44565266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 30283478 - 30283408
Alignment:
Q  19 ttgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 89  Q
    |||||||||||||||||| ||| |||||||||||||||  | | || |||||||| |||||||| ||||||    
T  30283478 ttgtattttattttgttatggggccaaaatcgcaacttcttgaaacataaggggtaaaaactgcaattaag 30283408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 24432407 - 24432338
Alignment:
Q  20 tgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 89  Q
    ||||||||||||| ||||||  |||||||||||||||  | |||||||  ||||||||| ||||||||||    
T  24432407 tgtattttatttttttagggagccaaaatcgcaacttcttgatacttagtgggtcaaaattgctattaag 24432338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 265
Target Start/End: Original strand, 9907094 - 9907154
Alignment:
Q  205 aaaacttattaaatgaatcctattaataacttaatgttattgtatgtcaataaagtttatt 265  Q
    |||| |||||||||  ||||||||||||||| ||||| ||||||| |||| ||||||||||    
T  9907094 aaaagttattaaatagatcctattaataactcaatgtcattgtatctcaaaaaagtttatt 9907154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 89
Target Start/End: Original strand, 21939326 - 21939386
Alignment:
Q  29 ttttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 89  Q
    |||| ||||||| |||||||||||||||  | ||||||| |||| ||||||||||||||||    
T  21939326 tttttttagggggccaaaatcgcaacttcgtgatacttagggggccaaaactgctattaag 21939386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 67
Target Start/End: Complemental strand, 15327780 - 15327726
Alignment:
Q  12 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatactta 67  Q
    ||||||||||||||||||||||||||||| ||||||| |||| || || |||||||    
T  15327780 ggctgaattgtattttattttgttagggg-ccaaaattgcaaattccttatactta 15327726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 88
Target Start/End: Complemental strand, 46265927 - 46265868
Alignment:
Q  29 ttttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaa 88  Q
    |||| ||||||| |||||||| ||||||  ||| ||||||||||| ||||||||||||||    
T  46265927 ttttcttagggggccaaaatcccaacttcttaaaacttaaggggttaaaactgctattaa 46265868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 24 - 75
Target Start/End: Original strand, 47113363 - 47113414
Alignment:
Q  24 ttttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtca 75  Q
    |||| |||||||||||| |||||||||||||||| ||| | |||||||||||    
T  47113363 tttttttttgttagggggccaaaatcgcaactttttaaaagttaaggggtca 47113414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 24679086 - 24679120
Alignment:
Q  19 ttgtattttattttgttaggggaccaaaatcgcaa 53  Q
    |||||||||||||||||||||| ||||||||||||    
T  24679086 ttgtattttattttgttagggggccaaaatcgcaa 24679120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 6792038 - 6792107
Alignment:
Q  19 ttgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaa 88  Q
    ||||| ||| |||| ||||||||||||||||||||||||  || | ||| ||||  ||||||||||||||    
T  6792038 ttgtagttttttttcttaggggaccaaaatcgcaactttggaaaagttagggggctaaaactgctattaa 6792107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 7873581 - 7873500
Alignment:
Q  19 ttgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaagtataaaataaa 100  Q
    ||||| ||||||| |||||||| ||||||||||||||   | | || || |||||||||||||| ||||||  |||||||||    
T  7873581 ttgtagtttatttagttagggggccaaaatcgcaactccttgaaacatagggggtcaaaactgcaattaagcctaaaataaa 7873500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 43724641 - 43724596
Alignment:
Q  12 ggctgaattgtattttattttgttaggggaccaaaatcgcaacttt 57  Q
    |||||| |||||||||| || |||||||| ||||||||||||||||    
T  43724641 ggctgatttgtattttaattagttagggggccaaaatcgcaacttt 43724596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 89
Target Start/End: Complemental strand, 3318380 - 3318320
Alignment:
Q  29 ttttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 89  Q
    |||| ||||||||||||||||||||||||  || | ||||||||  |||||| ||||||||    
T  3318380 tttttttaggggaccaaaatcgcaactttggaaaagttaaggggctaaaactcctattaag 3318320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 9500149 - 9500213
Alignment:
Q  24 ttttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaa 88  Q
    |||| |||| |||||||||||||||||||||||  | | ||||| ||||  ||||||||||||||    
T  9500149 tttttttttcttaggggaccaaaatcgcaacttcttgaaacttagggggctaaaactgctattaa 9500213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1088 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold1088
Description:

Target: scaffold1088; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 2105 - 2180
Alignment:
Q  12 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaa 88  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| || || |||||||||||||||    
T  2105 ggctgaattgtattttattttgttagggggccaaaatcgcaactttctaatgctt-agaggacaaaactgctattaa 2180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 90
Target Start/End: Original strand, 162278 - 162356
Alignment:
Q  12 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaagt 90  Q
    ||||| ||||||||||||||||||||||| |||||||| || ||| | ||||||||||||| |||||||||||||||||    
T  162278 ggctgtattgtattttattttgttagggggccaaaatcacatcttcccaatacttaaggggccaaaactgctattaagt 162356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 20987025 - 20986949
Alignment:
Q  12 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaa 88  Q
    ||||||||||||||| ||||||||||| || ||||||| ||||||||| |||||||  |||||||||||||||||||    
T  20987025 ggctgaattgtatttaattttgttaggagatcaaaatcacaactttctgatacttagagggtcaaaactgctattaa 20986949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 36501473 - 36501403
Alignment:
Q  18 attgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaagt 90  Q
    ||||||||||||||||||||||||||||||||||||||| || ||||||||  ||||||||||| | ||||||    
T  36501473 attgtattttattttgttaggggaccaaaatcgcaacttcctgatacttaa--ggtcaaaactgttgttaagt 36501403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 89
Target Start/End: Complemental strand, 38498198 - 38498121
Alignment:
Q  12 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 89  Q
    ||||||||||||||||||||| ||||||| | ||||| ||||||| || ||||||| | |||||||||||||||||||    
T  38498198 ggctgaattgtattttatttttttagggggcgaaaattgcaacttcctgatacttaggtggtcaaaactgctattaag 38498121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 37426695 - 37426765
Alignment:
Q  18 attgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 89  Q
    ||||||||||||||||||||||| | ||||| |||||||||| ||||||| |||| ||||||||||||||||    
T  37426695 attgtattttattttgttagggg-ctaaaattgcaactttctgatacttagggggccaaaactgctattaag 37426765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 88
Target Start/End: Original strand, 36628671 - 36628737
Alignment:
Q  22 tattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaa 88  Q
    ||||||||||| ||||||||||||||| ||||||| ||||||||||| || ||||||| ||||||||    
T  36628671 tattttattttattaggggaccaaaattgcaacttcctaatacttaaaggatcaaaaccgctattaa 36628737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 20364748 - 20364684
Alignment:
Q  25 tttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 89  Q
    ||||||||||||||||  |||||||||||||| || ||||||| |||| ||||||||||||||||    
T  20364748 tttattttgttagggggtcaaaatcgcaacttcctgatacttagggggacaaaactgctattaag 20364684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 88
Target Start/End: Original strand, 12167100 - 12167175
Alignment:
Q  13 gctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaa 88  Q
    |||| ||||||||||||||||||| |||||||||||   |||||| ||||||||| |||| || ||||||||||||    
T  12167100 gctggattgtattttattttgttaagggaccaaaattataactttttaatacttatgggggcagaactgctattaa 12167175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 38944178 - 38944245
Alignment:
Q  22 tattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 89  Q
    ||||||||||||||| | | ||| ||| ||||||| ||||||||||||||| ||||||||||||||||    
T  38944178 tattttattttgttaagaggccataattgcaacttcctaatacttaaggggccaaaactgctattaag 38944245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 11167945 - 11167875
Alignment:
Q  19 ttgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 89  Q
    ||||| |||||||| ||||||| |||||||| ||| ||| | |||||||||||||||||||| ||||||||    
T  11167945 ttgtaatttattttcttagggggccaaaatcacaagtttgtgatacttaaggggtcaaaactactattaag 11167875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 221 - 270
Target Start/End: Original strand, 4873488 - 4873537
Alignment:
Q  221 atcctattaataacttaatgttattgtatgtcaataaagtttattaattt 270  Q
    ||||||||||||||| ||||||||||||| |||| |||||||||||||||    
T  4873488 atcctattaataactcaatgttattgtatttcaacaaagtttattaattt 4873537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 67
Target Start/End: Complemental strand, 37426490 - 37426436
Alignment:
Q  13 gctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatactta 67  Q
    |||||||||||||||||||||||| | |  |||| ||||||||||||||||||||    
T  37426490 gctgaattgtattttattttgttaagaggtcaaagtcgcaactttctaatactta 37426436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 35 - 90
Target Start/End: Complemental strand, 16645031 - 16644976
Alignment:
Q  35 taggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaagt 90  Q
    |||||||| ||||||||||  || | |||||||||||||||||||||| |||||||    
T  16645031 taggggactaaaatcgcaaaattgtgatacttaaggggtcaaaactgcaattaagt 16644976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 88
Target Start/End: Complemental strand, 42169146 - 42169087
Alignment:
Q  29 ttttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaa 88  Q
    ||||| ||||||  |||||| |||||||||||||||||| |||| ||||||| |||||||    
T  42169146 ttttgctaggggttcaaaattgcaactttctaatacttagggggccaaaactactattaa 42169087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 34605 - 34663
Alignment:
Q  28 attttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 89  Q
    ||||| |||| ||||||||||||||||  |||||||||| |||||||||||||| |||||||    
T  34605 atttttttagaggaccaaaatcgcaac--tctaatactt-aggggtcaaaactgttattaag 34663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 89
Target Start/End: Complemental strand, 2427080 - 2427034
Alignment:
Q  43 caaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 89  Q
    ||||||| |||||| |||||||||| ||||||||||||| |||||||    
T  2427080 caaaatctcaacttcctaatacttagggggtcaaaactgttattaag 2427034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 6464317 - 6464387
Alignment:
Q  19 ttgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 89  Q
    ||||| ||||||| |||||||| |||||||||||||||  | | || || |||| ||||||||||||||||    
T  6464317 ttgtagtttatttagttagggggccaaaatcgcaacttcttgaaacatagggggccaaaactgctattaag 6464387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 10169087 - 10169049
Alignment:
Q  19 ttgtattttattttgttaggggaccaaaatcgcaacttt 57  Q
    |||||||||| || |||||||||||||||||||||||||    
T  10169087 ttgtattttaattagttaggggaccaaaatcgcaacttt 10169049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 16039742 - 16039780
Alignment:
Q  19 ttgtattttattttgttaggggaccaaaatcgcaacttt 57  Q
    |||||||||| || |||||||||||||||||||||||||    
T  16039742 ttgtattttaattagttaggggaccaaaatcgcaacttt 16039780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 89
Target Start/End: Complemental strand, 20369448 - 20369402
Alignment:
Q  43 caaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 89  Q
    ||||||||||||||||| |||||||  ||| ||||||||||||||||    
T  20369448 caaaatcgcaactttctgatacttagcgggacaaaactgctattaag 20369402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 22408787 - 22408825
Alignment:
Q  18 attgtattttattttgttaggggaccaaaatcgcaactt 56  Q
    |||||||||||||||||||||||  ||||||||||||||    
T  22408787 attgtattttattttgttagggggtcaaaatcgcaactt 22408825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 86
Target Start/End: Complemental strand, 36400532 - 36400470
Alignment:
Q  24 ttttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctatt 86  Q
    |||| |||| |||||||||||||||||||||||  ||| |||||  |||| ||||||||||||    
T  36400532 ttttttttttttaggggaccaaaatcgcaacttcttaaaacttatagggttaaaactgctatt 36400470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 36898642 - 36898696
Alignment:
Q  29 ttttgttaggg-gaccaaaatcgcaactttctaatacttaaggggtcaaaactgc 82  Q
    ||||||||||| | |||||||||||||||| ||||||||| ||||||||| ||||    
T  36898642 ttttgttagggaggccaaaatcgcaactttttaatacttagggggtcaaatctgc 36898696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 14189738 - 14189673
Alignment:
Q  17 aattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgc 82  Q
    ||||||| ||| |||| ||||||||||||||||||| |||| | | | ||| ||||||||||||||    
T  14189738 aattgtaattttttttattaggggaccaaaatcgcacctttatgaaagttagggggtcaaaactgc 14189673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 90
Target Start/End: Complemental strand, 18159774 - 18159713
Alignment:
Q  29 ttttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaagt 90  Q
    |||||||| |||  ||||||||||||||||| ||||||| | || ||||||||| |||||||    
T  18159774 ttttgttaagggttcaaaatcgcaactttctgatacttacgaggccaaaactgcaattaagt 18159713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 272
Target Start/End: Complemental strand, 33531140 - 33531083
Alignment:
Q  215 aaatgaatcctattaataacttaatgttattgtatgtcaataaagtttattaattttt 272  Q
    ||||| ||||||||||||||| | ||| ||||||| |||| |||||||||| ||||||    
T  33531140 aaatggatcctattaataactcattgtcattgtatttcaacaaagtttattgattttt 33531083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 13574896 - 13574818
Alignment:
Q  12 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttct--aatacttaaggggtcaaaactgctattaa 88  Q
    ||||||||||||||||||||||||||||| |||||||   ||||||||  |||||||||||||||||||||| ||||||    
T  13574896 ggctgaattgtattttattttgttagggggccaaaattataactttctaaaatacttaaggggtcaaaactgttattaa 13574818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 31651409 - 31651337
Alignment:
Q  15 tgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaa 88  Q
    ||||||| |||||||||||||| || ||||||||||||||||||||||||||| |||| |||| ||||||||||    
T  31651409 tgaattgaattttattttgttaagg-accaaaatcgcaactttctaatacttatggggccaaagctgctattaa 31651337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 1484658 - 1484734
Alignment:
Q  12 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaa 88  Q
    ||||||||||||||||| |||||||||||  ||||||| |||||| ||||||||||  ||| |||||||||||||||    
T  1484658 ggctgaattgtattttactttgttagggggtcaaaatcacaacttcctaatacttagagggccaaaactgctattaa 1484734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 39411894 - 39411964
Alignment:
Q  18 attgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaagt 90  Q
    |||||||||||||||||||||||  ||||||||||||||||| |||||| ||||||||||||||| |||||||    
T  39411894 attgtattttattttgttagggg-tcaaaatcgcaactttcttatactt-aggggtcaaaactgcaattaagt 39411964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 10532283 - 10532217
Alignment:
Q  22 tattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 89  Q
    |||||||||||||| |||| | ||||||||||||| |||||||||| |||||||||||||||||||||    
T  10532283 tattttattttgttgggggtc-aaaatcgcaacttcctaatacttagggggtcaaaactgctattaag 10532217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 12 - 89
Target Start/End: Complemental strand, 29816195 - 29816121
Alignment:
Q  12 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 89  Q
    ||||||||||||||||||||||||||||| ||||||   |||||| || ||||||| |||||||||| ||||||||||    
T  29816195 ggctgaattgtattttattttgttagggggccaaaa---caacttcctgatacttagggggtcaaaattgctattaag 29816121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 90
Target Start/End: Original strand, 10532492 - 10532570
Alignment:
Q  12 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaagt 90  Q
    ||||| |||||||||||||||||| | || ||||||||| ||||| ||||||| || |||| |||||||||||||||||    
T  10532492 ggctggattgtattttattttgttggagggccaaaatcgtaacttcctaatacatagggggccaaaactgctattaagt 10532570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 29816413 - 29816482
Alignment:
Q  18 attgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaa 88  Q
    |||||||||||||||||| ||||||||||||||||||||  | ||| |||||||||||||||| |||||||    
T  29816413 attgtattttattttgtt-ggggaccaaaatcgcaacttcttgatatttaaggggtcaaaactactattaa 29816482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 81
Target Start/End: Original strand, 10231113 - 10231180
Alignment:
Q  14 ctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactg 81  Q
    |||||||||||||||||||||||| || ||||||||| |||||  ||||||||| |||| ||||||||    
T  10231113 ctgaattgtattttattttgttagagggccaaaatcgaaacttcttaatacttagggggccaaaactg 10231180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 90
Target Start/End: Original strand, 13575137 - 13575214
Alignment:
Q  12 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaagt 90  Q
    ||||| ||||||||||||||||||| ||| ||||||||||| ||| || ||||||| ||||  ||||||||||||||||    
T  13575137 ggctggattgtattttattttgttatggg-ccaaaatcgcatcttcctgatacttagggggctaaaactgctattaagt 13575214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 37008289 - 37008219
Alignment:
Q  19 ttgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 89  Q
    |||||||||||||||||||||| |||||||||||||||  | | || || |||| ||||||||||||||||    
T  37008289 ttgtattttattttgttagggggccaaaatcgcaacttcttgaaacatagggggccaaaactgctattaag 37008219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 31651643 - 31651708
Alignment:
Q  15 tgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaact 80  Q
    |||||| ||||||||||||||| |||| ||||||| ||||||||||||||||| |||  |||||||    
T  31651643 tgaattatattttattttgttaagggatcaaaatcacaactttctaatacttatgggaccaaaact 31651708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 89
Target Start/End: Original strand, 51690435 - 51690512
Alignment:
Q  12 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 89  Q
    ||||||||||||||||||||||||| | | |||||||||||||||||  ||| ||| | | |||||||| ||||||||    
T  51690435 ggctgaattgtattttattttgttacgaggccaaaatcgcaactttcggatatttaggagatcaaaactactattaag 51690512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 12 - 80
Target Start/End: Complemental strand, 1484449 - 1484381
Alignment:
Q  12 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaact 80  Q
    ||||||||| |||||||||||||||| || ||||||||||||||| |  ||||||| |||| |||||||    
T  1484449 ggctgaattatattttattttgttagagggccaaaatcgcaacttccagatacttagggggccaaaact 1484381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 22347595 - 22347539
Alignment:
Q  13 gctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaag 69  Q
    |||| ||||||||||||||||||||||||  |||| |||||||| ||||||||||||    
T  22347595 gctggattgtattttattttgttaggggagtaaaagcgcaacttcctaatacttaag 22347539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 39411662 - 39411604
Alignment:
Q  12 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggg 71  Q
    ||||||||||||||||||||||||||||| ||||||||  || || ||||||||||||||    
T  39411662 ggctgaattgtattttattttgttagggg-ccaaaatcctaatttcctaatacttaaggg 39411604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 83963 - 83893
Alignment:
Q  18 attgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaa 88  Q
    ||||||||||||||||| |||||  |||||| |||| |||||||||||||   |||||||||| |||||||    
T  83963 attgtattttattttgtaagggggtcaaaattgcaattttctaatacttagaaggtcaaaactactattaa 83893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 6940901 - 6940975
Alignment:
Q  12 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaa 88  Q
    ||||| |||||||||||||||||||| |   |||||| |||| |||||| ||||||  |||||||||||||||||||    
T  6940901 ggctggattgtattttattttgttagagagacaaaattgcaattttctattactta--gggtcaaaactgctattaa 6940975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 31907934 - 31908003
Alignment:
Q  19 ttgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaa 88  Q
    ||||||||||||||||||   |||||||||| |||||| || ||| ||||| || |||||||||||||||    
T  31907934 ttgtattttattttgttaaatgaccaaaatcacaacttcctgatatttaagtggccaaaactgctattaa 31908003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 215 - 272
Target Start/End: Complemental strand, 52575612 - 52575555
Alignment:
Q  215 aaatgaatcctattaataacttaatgttattgtatgtcaataaagtttattaattttt 272  Q
    ||||| ||||||||||||||| | ||| ||||||| |||| |||||||||||||||||    
T  52575612 aaatggatcctattaataactcattgtcattgtatttcaacaaagtttattaattttt 52575555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 367161 - 367196
Alignment:
Q  19 ttgtattttattttgttaggggaccaaaatcgcaac 54  Q
    |||||||||||||||||||||| |||||||||||||    
T  367161 ttgtattttattttgttagggggccaaaatcgcaac 367196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 90
Target Start/End: Original strand, 84255 - 84332
Alignment:
Q  12 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaagt 90  Q
    ||||| |||||||||||||||||||| |  ||||||| ||||||| || |||||| |||   |||||||||||||||||    
T  84255 ggctggattgtattttattttgttagagagccaaaattgcaacttcctgatactt-aggatgcaaaactgctattaagt 84332  T

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Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 7196953 - 7197023
Alignment:
Q  19 ttgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 89  Q
    ||||| ||||||| |||||||   ||||||||||||||  ||| || ||||||||| ||||||||||||||    
T  7196953 ttgtagtttatttagttagggagtcaaaatcgcaacttcttaaaacataaggggtcgaaactgctattaag 7197023  T

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Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 13344417 - 13344455
Alignment:
Q  19 ttgtattttattttgttaggggaccaaaatcgcaacttt 57  Q
    |||||||||| || |||||||||||||||||||||||||    
T  13344417 ttgtattttaattagttaggggaccaaaatcgcaacttt 13344455  T

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Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 40345572 - 40345642
Alignment:
Q  19 ttgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 89  Q
    |||||||||||||||||| | | |||||||||||||||| ||| || |||| || ||||| || |||||||    
T  40345572 ttgtattttattttgttatgaggccaaaatcgcaactttttaaaacataagaggccaaaattgttattaag 40345642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 89
Target Start/End: Original strand, 39384562 - 39384639
Alignment:
Q  12 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 89  Q
    ||||| ||||||||||||||| ||||| | ||||| ||||||||| || ||||||| |||  ||||||| || |||||    
T  39384562 ggctggattgtattttattttattaggaggccaaattcgcaacttcctgatacttaggggaccaaaactactgttaag 39384639  T

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Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 270
Target Start/End: Original strand, 43702718 - 43702763
Alignment:
Q  225 tattaataacttaatgttattgtatgtcaataaagtttattaattt 270  Q
    ||||||||||||||||| ||||||| |||| |||||||||| ||||    
T  43702718 tattaataacttaatgtcattgtatttcaacaaagtttattgattt 43702763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 50379956 - 50380021
Alignment:
Q  17 aattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgc 82  Q
    ||||||| ||| |||| ||||||||||||||||||| |||| | | | ||| ||||||||||||||    
T  50379956 aattgtaattttttttattaggggaccaaaatcgcacctttatgaaagttagggggtcaaaactgc 50380021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 89
Target Start/End: Complemental strand, 1096529 - 1096469
Alignment:
Q  29 ttttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 89  Q
    |||| ||||||||||||||||||||||||  || | ||||||||  ||||||| |||||||    
T  1096529 tttttttaggggaccaaaatcgcaactttggaaaagttaaggggctaaaactgttattaag 1096469  T

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Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 89
Target Start/End: Original strand, 5287826 - 5287886
Alignment:
Q  29 ttttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 89  Q
    |||| ||||||| ||||||||||||||||   | | ||||||||| |||||||||||||||    
T  5287826 tttttttagggggccaaaatcgcaactttgagaaagttaaggggttaaaactgctattaag 5287886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 265
Target Start/End: Original strand, 12268208 - 12268252
Alignment:
Q  221 atcctattaataacttaatgttattgtatgtcaataaagtttatt 265  Q
    ||||||||||||||| ||||| ||||||| |||| ||||||||||    
T  12268208 atcctattaataactcaatgtcattgtatttcaaaaaagtttatt 12268252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 13 - 90
Target Start/End: Original strand, 29219359 - 29219436
Alignment:
Q  13 gctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaagt 90  Q
    |||| ||||||| ||||||||||||||| | ||||||||||||| |||||||||| ||||||| || |||||||||||    
T  29219359 gctggattgtatattattttgttagggggctaaaatcgcaacttcctaatacttagggggtcagaattgctattaagt 29219436  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 89
Target Start/End: Original strand, 4694989 - 4695067
Alignment:
Q  12 ggctgaattgtattttattttgtt-aggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 89  Q
    |||||||||||||||||||||||| ||||| |||||||| ||||||| | ||||||| |||| |||||||||| |||||    
T  4694989 ggctgaattgtattttattttgttaagggggccaaaatcacaactttttgatacttagggggccaaaactgcttttaag 4695067  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 89
Target Start/End: Complemental strand, 9498985 - 9498911
Alignment:
Q  15 tgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 89  Q
    |||||||||||||||||||||| |||  |||||||||||||| || ||||||| |||| |||||||| |||||||    
T  9498985 tgaattgtattttattttgttatggggtcaaaatcgcaacttcctgatacttagggggccaaaactgttattaag 9498911  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 12 - 89
Target Start/End: Original strand, 9234715 - 9234792
Alignment:
Q  12 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 89  Q
    |||| |||||||||||| |||||||| || ||||||||||||||| || ||| ||||||| |||||||| ||||||||    
T  9234715 ggctaaattgtattttaatttgttagagggccaaaatcgcaacttcctgatatttaagggatcaaaactactattaag 9234792  T

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Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 34232835 - 34232761
Alignment:
Q  12 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaa 88  Q
    ||||||||||||||||||||| ||||||| ||||||| ||||| | ||||||||| ||||| |||||||||||||||    
T  34232835 ggctgaattgtattttattttattagggggccaaaattgcaac-tcctaatactt-aggggccaaaactgctattaa 34232761  T

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Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 8409807 - 8409876
Alignment:
Q  19 ttgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 89  Q
    |||||||||||||||||||||| |||||||||||||||  ||| || | | ||||||||||||||||||||    
T  8409807 ttgtattttattttgttaggggcccaaaatcgcaacttcttaaaacat-atgggtcaaaactgctattaag 8409876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 45522433 - 45522503
Alignment:
Q  19 ttgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 89  Q
    |||||||||||||||||||||| | |||||||||||||  ||| || || ||||||||||||||| |||||    
T  45522433 ttgtattttattttgttagggggctaaaatcgcaacttcttaaaacatagggggtcaaaactgcttttaag 45522503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 89
Target Start/End: Original strand, 5899514 - 5899591
Alignment:
Q  12 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 89  Q
    ||||||||||||||||||||||||| | ||||||||| |||||||| | |||||||   || |||||||| |||||||    
T  5899514 ggctgaattgtattttattttgttatgagaccaaaattgcaactttgtgatacttagatggccaaaactgttattaag 5899591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 29919146 - 29919070
Alignment:
Q  19 ttgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaagtataaaa 96  Q
    ||||| |||||||||||||||| ||||||||||||  |  | ||||||| |||||||||||||||||||||| |||||    
T  29919146 ttgtaatttattttgttagggg-ccaaaatcgcaagatcgtgatacttagggggtcaaaactgctattaagtctaaaa 29919070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 29219149 - 29219086
Alignment:
Q  18 attgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactg 81  Q
    ||||||||||||||| ||||||||| |||||| |||||| |||||||||| |||  ||||||||    
T  29219149 attgtattttattttattaggggactaaaatcacaacttcctaatacttaggggaccaaaactg 29219086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 2044750 - 2044678
Alignment:
Q  15 tgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaa 88  Q
    |||||||||||||||||||||| ||| || ||||||||| ||  | |||||| ||||| |||||||||||||||    
T  2044750 tgaattgtattttattttgttatggggccgaaatcgcaatttcatgatactt-aggggccaaaactgctattaa 2044678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 90
Target Start/End: Complemental strand, 4461732 - 4461675
Alignment:
Q  33 gttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaagt 90  Q
    ||||||||||||||||||||| ||| | | || ||||||| |||||||||||||||||    
T  4461732 gttaggggaccaaaatcgcaaatttttgaaacataaggggccaaaactgctattaagt 4461675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 5899283 - 5899210
Alignment:
Q  18 attgtattttattttgttaggggaccaaaatcgcaactttctaatactta-aggggtcaaaactgctattaagt 90  Q
    ||||||||||||||||||||||  || |||||||||||| || |||||||  |||| |||||||| ||||||||    
T  5899283 attgtattttattttgttagggagccgaaatcgcaacttcctgatacttaggggggccaaaactgttattaagt 5899210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 287
Target Start/End: Original strand, 12112091 - 12112162
Alignment:
Q  215 aaatgaatcctattaataacttaatgttattgtatgtcaataaagtttattaattttttatacaatttaataa 287  Q
    |||||| || ||||||||||| ||||| ||||||| |||| |||||||||| | |||| ||||||||||||||    
T  12112091 aaatgagtcatattaataactcaatgtcattgtatttcaaaaaagtttattca-ttttaatacaatttaataa 12112162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 18929381 - 18929305
Alignment:
Q  12 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaa 88  Q
    ||||| ||||||||||||||||||||| |  ||||||| ||||||| | ||| ||||| || ||| |||||||||||    
T  18929381 ggctggattgtattttattttgttaggaggtcaaaatctcaactttttgataattaagaggccaatactgctattaa 18929305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 2802706 - 2802651
Alignment:
Q  33 gttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaa 88  Q
    |||| ||| |||||||||||||||  |||||| || ||||||||||||||||||||    
T  2802706 gttatgggtccaaaatcgcaacttcttaatacatagggggtcaaaactgctattaa 2802651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 43 - 90
Target Start/End: Original strand, 9499223 - 9499270
Alignment:
Q  43 caaaatcgcaactttctaatacttaaggggtcaaaactgctattaagt 90  Q
    ||||||||||||||  ||||||||| |||| |||||||||||||||||    
T  9499223 caaaatcgcaacttcgtaatacttagggggccaaaactgctattaagt 9499270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 7477409 - 7477371
Alignment:
Q  19 ttgtattttattttgttaggggaccaaaatcgcaacttt 57  Q
    |||||||||| || |||||||||||||||||||||||||    
T  7477409 ttgtattttaattagttaggggaccaaaatcgcaacttt 7477371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 14170494 - 14170424
Alignment:
Q  19 ttgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 89  Q
    ||||| |||||||  ||||||| |||||||||||||||  ||| || || |||||||||||||| ||||||    
T  14170494 ttgtagtttatttaattagggggccaaaatcgcaacttcttaaaacatagggggtcaaaactgcaattaag 14170424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 5645767 - 5645804
Alignment:
Q  19 ttgtattttattttgttaggggaccaaaatcgcaactt 56  Q
    |||||||||||||||||||||| |||||||| ||||||    
T  5645767 ttgtattttattttgttagggggccaaaatcacaactt 5645804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 7658826 - 7658871
Alignment:
Q  12 ggctgaattgtattttattttgttaggggaccaaaatcgcaacttt 57  Q
    |||||| |||||||||| || |||||||| ||||||||||||||||    
T  7658826 ggctgatttgtattttaattagttagggggccaaaatcgcaacttt 7658871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 25897062 - 25896993
Alignment:
Q  19 ttgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaa 88  Q
    ||||| ||| |||||||||||| ||||||||||||||||  || | ||| ||||  ||||||||||||||    
T  25897062 ttgtagttttttttgttagggggccaaaatcgcaactttgaaaaagttagggggctaaaactgctattaa 25896993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 29196604 - 29196641
Alignment:
Q  19 ttgtattttattttgttaggggaccaaaatcgcaactt 56  Q
    ||||||||||||||||||| |||||| |||||||||||    
T  29196604 ttgtattttattttgttagaggaccataatcgcaactt 29196641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 29340840 - 29340771
Alignment:
Q  19 ttgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaa 88  Q
    |||||||||||||||||| ||| |||||||||||| ||  | | || || |||| |||||||||||||||    
T  29340840 ttgtattttattttgttaaggggccaaaatcgcaaattatttaaacatagggggccaaaactgctattaa 29340771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 89
Target Start/End: Complemental strand, 3369926 - 3369849
Alignment:
Q  12 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 89  Q
    ||||||||||||||||||||||||||||| |||||||||||||||  | ||||||| ||||  ||||||| |||||||    
T  3369926 ggctgaattgtattttattttgttagggggccaaaatcgcaacttcttgatacttagggggcaaaaactgatattaag 3369849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 89
Target Start/End: Original strand, 30627008 - 30627085
Alignment:
Q  12 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 89  Q
    ||||||||||||||||||||||||| |||  |||||||| |||||| | ||||||| ||||| |||||||||||||||    
T  30627008 ggctgaattgtattttattttgttatggggtcaaaatcgtaactttttgatacttagggggtgaaaactgctattaag 30627085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 13 - 90
Target Start/End: Original strand, 33090527 - 33090603
Alignment:
Q  13 gctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaagt 90  Q
    ||||||||||||||| ||||||||  || ||||| |||||||||||||||||||| |||||||||||| |||||||||    
T  33090527 gctgaattgtattttgttttgttatagggccaaa-tcgcaactttctaatacttagggggtcaaaactactattaagt 33090603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 16323050 - 16322978
Alignment:
Q  18 attgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaagt 90  Q
    ||||||||||||||||||| |||  ||||||||||||||  |||||||||||||| |||||||| ||||||||    
T  16323050 attgtattttattttgttatggggtcaaaatcgcaacttcttaatacttaaggggccaaaactgttattaagt 16322978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 49000673 - 49000598
Alignment:
Q  12 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaa 88  Q
    ||||||||||||||||||||||||| | ||  |||||||||||||||||||| |||| | ||||||||| |||||||    
T  49000673 ggctgaattgtattttattttgttatgagaataaaatcgcaactttctaatatttaa-gagtcaaaactactattaa 49000598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 205 - 283
Target Start/End: Original strand, 23125839 - 23125917
Alignment:
Q  205 aaaacttattaaatgaatcctattaataacttaatgttattgtatgtcaataaagtttattaattttttatacaattta 283  Q
    |||| ||| ||||| |||| ||||||||||| ||||| ||||||| |||| |||||||||||||||| | |||||||||    
T  23125839 aaaagttaataaataaatcatattaataactcaatgtcattgtatttcaacaaagtttattaattttgtgtacaattta 23125917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 88
Target Start/End: Complemental strand, 30626660 - 30626587
Alignment:
Q  14 ctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaa 88  Q
    |||||||||||||| |||||||||| | |||||||||||| || || |||||| ||||| |||||||||||||||    
T  30626660 ctgaattgtattttcttttgttaggaggccaaaatcgcaatttcctgatactt-aggggccaaaactgctattaa 30626587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 53831224 - 53831154
Alignment:
Q  19 ttgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 89  Q
    ||||| ||||||| ||||||||||||||||||||||||  ||| || || |||| ||||||||||||||||    
T  53831224 ttgtagtttatttagttaggggaccaaaatcgcaacttcttaaaacatagggggccaaaactgctattaag 53831154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 11787135 - 11787065
Alignment:
Q  18 attgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 89  Q
    ||||||||||||||||| ||||| | |||||||||||||||| ||| ||| | || ||||||||||||||||    
T  11787135 attgtattttattttgtcagggggc-aaaatcgcaactttctgatatttaggagggcaaaactgctattaag 11787065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 11799302 - 11799232
Alignment:
Q  18 attgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 89  Q
    ||||||||||||||||| ||||| | |||||||||||||||| ||| ||| | || ||||||||||||||||    
T  11799302 attgtattttattttgtcagggggc-aaaatcgcaactttctgatatttaggagggcaaaactgctattaag 11799232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 54953801 - 54953732
Alignment:
Q  12 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgct 83  Q
    ||||||||| ||||||||||||||| ||| | ||||||||||||| ||||||||| ||||| ||||||||||    
T  54953801 ggctgaattatattttattttgttatgggtc-aaaatcgcaacttcctaatactt-agggggcaaaactgct 54953732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 33122853 - 33122902
Alignment:
Q  12 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaa 61  Q
    |||| ||||||||||||||||||| ||||| |||||||||||||| ||||    
T  33122853 ggctaaattgtattttattttgtttggggatcaaaatcgcaacttcctaa 33122902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 15845162 - 15845209
Alignment:
Q  12 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttct 59  Q
    ||||| |||||||||||||||||||| ||| |||||||| ||||||||    
T  15845162 ggctggattgtattttattttgttagaggatcaaaatcgtaactttct 15845209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 26858416 - 26858378
Alignment:
Q  19 ttgtattttattttgttaggggaccaaaatcgcaacttt 57  Q
    |||||||||| || |||||||||||||||||||||||||    
T  26858416 ttgtattttaattagttaggggaccaaaatcgcaacttt 26858378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 30064074 - 30064004
Alignment:
Q  19 ttgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 89  Q
    ||||| |||| || ||||||||||||||||||||||||  ||| || || |||| ||||||| ||||||||    
T  30064074 ttgtagtttacttagttaggggaccaaaatcgcaacttcttaaaacatagggggccaaaacttctattaag 30064004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 67
Target Start/End: Complemental strand, 45917622 - 45917584
Alignment:
Q  29 ttttgttaggggaccaaaatcgcaactttctaatactta 67  Q
    ||||||||||||||||||||  |||||||||||||||||    
T  45917622 ttttgttaggggaccaaaattacaactttctaatactta 45917584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 283
Target Start/End: Complemental strand, 48087354 - 48087297
Alignment:
Q  225 tattaataacttaatgttattgtatgtcaataaagtttattaattttttatacaattta 283  Q
    ||||||||||| ||||||||||||| |||| |||||||||| | ||| |||||||||||    
T  48087354 tattaataactcaatgttattgtatttcaacaaagtttattca-tttgtatacaattta 48087297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 270
Target Start/End: Complemental strand, 229992 - 229943
Alignment:
Q  221 atcctattaataacttaatgttattgtatgtcaataaagtttattaattt 270  Q
    ||||||||||||||| ||||| ||||||| |||| |||||||||| ||||    
T  229992 atcctattaataactcaatgtcattgtatttcaacaaagtttattgattt 229943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 89
Target Start/End: Original strand, 1096534 - 1096611
Alignment:
Q  12 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 89  Q
    |||||| ||||| |||||||||||||||| |||||||||| |  |  | ||||||| |||| ||||||||| ||||||    
T  1096534 ggctgagttgtaatttattttgttagggggccaaaatcgccaaatcatgatacttagggggccaaaactgcaattaag 1096611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 5303842 - 5303781
Alignment:
Q  20 tgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactg 81  Q
    |||| |||||||||||| |||  |||||||||||||| || ||||||| |||| ||||||||    
T  5303842 tgtaatttattttgttaaggggtcaaaatcgcaacttcctgatacttagggggacaaaactg 5303781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 9180654 - 9180719
Alignment:
Q  17 aattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgc 82  Q
    ||||||| ||| |||| ||||||| |||||||| || |||| ||| | ||||||||||||||||||    
T  9180654 aattgtaattttttttattagggggccaaaatcacacctttataaaagttaaggggtcaaaactgc 9180719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 89
Target Start/End: Original strand, 13826280 - 13826325
Alignment:
Q  44 aaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 89  Q
    |||||||||||||| ||| ||||||||||| ||||||| |||||||    
T  13826280 aaaatcgcaactttttaaaacttaaggggttaaaactgttattaag 13826325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 47742303 - 47742234
Alignment:
Q  19 ttgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaa 88  Q
    ||||| ||||||| |||||||| ||||||||||||||| || | || || | || |||||||||||||||    
T  47742303 ttgtagtttatttagttagggggccaaaatcgcaacttcctgaaacataggtggacaaaactgctattaa 47742234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 47742586 - 47742655
Alignment:
Q  19 ttgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaa 88  Q
    ||||| ||||||| |||||||| | ||||||| |||||  ||| || || ||||||||||||||||||||    
T  47742586 ttgtaatttatttagttagggggctaaaatcgtaacttcttaaaacatagggggtcaaaactgctattaa 47742655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 45
Target Start/End: Original strand, 48188326 - 48188359
Alignment:
Q  12 ggctgaattgtattttattttgttaggggaccaa 45  Q
    ||||||||||||||||||||||||||||| ||||    
T  48188326 ggctgaattgtattttattttgttagggggccaa 48188359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 49804338 - 49804375
Alignment:
Q  19 ttgtattttattttgttaggggaccaaaatcgcaactt 56  Q
    |||||||||||||| |||||||| ||||||||||||||    
T  49804338 ttgtattttatttttttaggggatcaaaatcgcaactt 49804375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 89
Target Start/End: Complemental strand, 55038232 - 55038155
Alignment:
Q  12 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 89  Q
    |||||| ||||| |||||||||||  ||||| ||||||||||  |  | ||||||| ||||||||||||| |||||||    
T  55038232 ggctgagttgtaatttattttgttcagggactaaaatcgcaagatcgtgatacttagggggtcaaaactgttattaag 55038155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 89
Target Start/End: Original strand, 23759825 - 23759885
Alignment:
Q  29 ttttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 89  Q
    |||| |||||||||||||||||||||||| | | | ||||||||| |||| || |||||||    
T  23759825 ttttcttaggggaccaaaatcgcaactttatgaaagttaaggggttaaaattgttattaag 23759885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 1894717 - 1894791
Alignment:
Q  12 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaa 88  Q
    |||||||||||||||||||||||||||||   ||||||||||||||||||||||| || | ||||||||||||||||    
T  1894717 ggctgaattgtattttattttgttagggg-ttaaaatcgcaactttctaatactt-agagctcaaaactgctattaa 1894791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 12 - 95
Target Start/End: Original strand, 2164692 - 2164775
Alignment:
Q  12 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaagtataaa 95  Q
    ||||| ||||||||||||||||||||||   |||||||||||||| || ||||| | |||| |||||||||||||||| |||||    
T  2164692 ggctggattgtattttattttgttagggtgtcaaaatcgcaacttcctgatactcagggggccaaaactgctattaagcataaa 2164775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 12 - 95
Target Start/End: Original strand, 2176325 - 2176408
Alignment:
Q  12 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaagtataaa 95  Q
    ||||| ||||||||||||||||||||||   |||||||||||||| || ||||| | |||| |||||||||||||||| |||||    
T  2176325 ggctggattgtattttattttgttagggtgtcaaaatcgcaacttcctgatactcagggggccaaaactgctattaagcataaa 2176408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 1615034 - 1615103
Alignment:
Q  13 gctgaattgtattttattttgttagggga-ccaaaatcgcaactttctaatacttaaggggtcaaaactg 81  Q
    |||| |||||||||||||||||||||||  |||||||||||||||||||||||||| ||||  |||||||    
T  1615034 gctggattgtattttattttgttaggggggccaaaatcgcaactttctaatacttagggggctaaaactg 1615103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 30369853 - 30369786
Alignment:
Q  21 gtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 89  Q
    |||||||||||||||||||||| |||||||||||||  ||| || ||||||| ||||||||||||||||    
T  30369853 gtattttattttgttaggggac-aaaatcgcaacttcttaaaacataaggggccaaaactgctattaag 30369786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 12101692 - 12101751
Alignment:
Q  12 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggg 71  Q
    ||||| ||||||||||||||||||||| | |||||||| ||||||||| |||||||||||    
T  12101692 ggctggattgtattttattttgttaggaggccaaaatcacaactttctgatacttaaggg 12101751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 89
Target Start/End: Complemental strand, 2164498 - 2164422
Alignment:
Q  12 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 89  Q
    ||||||| ||||||||| ||| ||||||| |||||||||||||||| | |||||||  || |||||||||||||||||    
T  2164498 ggctgaactgtattttactttattagggg-ccaaaatcgcaactttatgatacttagaggatcaaaactgctattaag 2164422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 89
Target Start/End: Complemental strand, 2176131 - 2176055
Alignment:
Q  12 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 89  Q
    ||||||| ||||||||| ||| ||||||| |||||||||||||||| | |||||||  || |||||||||||||||||    
T  2176131 ggctgaactgtattttactttattagggg-ccaaaatcgcaactttatgatacttagaggatcaaaactgctattaag 2176055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 15139642 - 15139574
Alignment:
Q  21 gtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 89  Q
    ||||||||||||||||  || | ||||||||||||| ||| |||||| | |||||||||||||||||||    
T  15139642 gtattttattttgttaaagggcaaaaatcgcaacttcctagtacttaggaggtcaaaactgctattaag 15139574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 67
Target Start/End: Complemental strand, 1614893 - 1614838
Alignment:
Q  12 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatactta 67  Q
    ||||| ||||||||||||||||||||| | ||| ||||||||||| ||||||||||    
T  1614893 ggctggattgtattttattttgttaggaggccacaatcgcaacttcctaatactta 1614838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 12799034 - 12799071
Alignment:
Q  19 ttgtattttattttgttaggggaccaaaatcgcaactt 56  Q
    |||||||||||||||||||| |||||||||||||||||    
T  12799034 ttgtattttattttgttaggtgaccaaaatcgcaactt 12799071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 499346 - 499417
Alignment:
Q  19 ttgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaagt 90  Q
    ||||| ||||||||||||||||||||||||||| |  |  | ||||||| | |||||||||||| |||||||    
T  499346 ttgtaatttattttgttaggggaccaaaatcgccagatcgtgatacttacgaggtcaaaactgcgattaagt 499417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 2539054 - 2538985
Alignment:
Q  19 ttgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 89  Q
    ||||||||||||||||||||||  ||||||||||||||| ||| || || |||  ||||||| ||||||||    
T  2539054 ttgtattttattttgttagggg-tcaaaatcgcaactttttaaaacataggggaccaaaactactattaag 2538985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 2840861 - 2840823
Alignment:
Q  19 ttgtattttattttgttaggggaccaaaatcgcaacttt 57  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  2840861 ttgtattttttttttttaggggaccaaaatcgcaacttt 2840823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 12730577 - 12730615
Alignment:
Q  19 ttgtattttattttgttaggggaccaaaatcgcaacttt 57  Q
    |||||||||| || |||||||||||||||||||||||||    
T  12730577 ttgtattttaattagttaggggaccaaaatcgcaacttt 12730615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 1894521 - 1894472
Alignment:
Q  18 attgtattttattttgttaggggaccaaaatcgcaactttctaatactta 67  Q
    ||||||||||||||| ||||| |||||||||| ||||||| ||| |||||    
T  1894521 attgtattttattttattaggtgaccaaaatcacaactttataaaactta 1894472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 89
Target Start/End: Original strand, 8223982 - 8224042
Alignment:
Q  29 ttttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 89  Q
    |||| |||||||| |||||||||||||||  || | ||||  |||||||||||||||||||    
T  8223982 tttttttaggggatcaaaatcgcaactttagaaaagttaataggtcaaaactgctattaag 8224042  T

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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 23993894 - 23993970
Alignment:
Q  12 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaa 88  Q
    ||||| ||||||||||||||||||||||| ||||||| |||||||  ||||||||| || | |||||||||||||||    
T  23993894 ggctggattgtattttattttgttagggggccaaaattgcaacttcttaatacttagggagccaaaactgctattaa 23993970  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 90
Target Start/End: Original strand, 35125158 - 35125235
Alignment:
Q  12 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaagt 90  Q
    |||||||||||||||| ||||||||||||  ||||||||| |||| ||||||||| ||||| |||||||| ||||||||    
T  35125158 ggctgaattgtattttcttttgttagggggtcaaaatcgctacttcctaatactt-aggggccaaaactgttattaagt 35125235  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 12 - 89
Target Start/End: Complemental strand, 23993801 - 23993725
Alignment:
Q  12 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 89  Q
    ||||| ||| |||||||||||||| || |||||||||||||||||||| ||||||| ||| | |||||||||||||||    
T  23993801 ggctggattatattttattttgtt-ggagaccaaaatcgcaactttctgatacttaggggataaaaactgctattaag 23993725  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 89
Target Start/End: Complemental strand, 14289344 - 14289268
Alignment:
Q  12 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 89  Q
    |||| |||||||||||||||||||||||| |||||||||||||||  | |||||| ||| |  |||||||||||||||    
T  14289344 ggctaaattgtattttattttgttagggggccaaaatcgcaacttcatgatactt-aggaggaaaaactgctattaag 14289268  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 31226924 - 31226855
Alignment:
Q  18 attgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctatta 87  Q
    |||||||||||||||||||  || |||| ||| ||||||||| ||||||| |||| ||||||||||||||    
T  31226924 attgtattttattttgttacagggccaagatctcaactttctgatacttagggggccaaaactgctatta 31226855  T

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Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 31227123 - 31227199
Alignment:
Q  12 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaa 88  Q
    ||||| |||||||||||||||||||| ||  |||||||||||||| || ||| ||| | || |||||||||||||||    
T  31227123 ggctgtattgtattttattttgttagagggtcaaaatcgcaacttcctgatatttaggaggccaaaactgctattaa 31227199  T

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Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 9780927 - 9780997
Alignment:
Q  19 ttgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 89  Q
    ||||| ||||||| ||||| ||| ||||||||||||||| ||| || ||||||| ||||||||| ||||||    
T  9780927 ttgtagtttatttagttagaggatcaaaatcgcaactttttaaaacataaggggccaaaactgcaattaag 9780997  T

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Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 89
Target Start/End: Complemental strand, 10522722 - 10522645
Alignment:
Q  12 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 89  Q
    ||||| ||||||||||||||| |||| ||||||||||| ||||||  | ||||||||||    |||||||||||||||    
T  10522722 ggctgcattgtattttattttattagtggaccaaaatcacaacttcttgatacttaaggaccaaaaactgctattaag 10522645  T

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Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 29370788 - 29370719
Alignment:
Q  19 ttgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaa 88  Q
    |||||||||||||||| |||||| ||||||||||||||  ||| || || |||| ||||||| |||||||    
T  29370788 ttgtattttattttgtcaggggatcaaaatcgcaacttcttaaaacatagggggccaaaacttctattaa 29370719  T

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Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 35500333 - 35500370
Alignment:
Q  19 ttgtattttattttgttaggggaccaaaatcgcaactt 56  Q
    |||||||||||||||||||||| |||||||||||||||    
T  35500333 ttgtattttattttgttagggggccaaaatcgcaactt 35500370  T

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Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 3198532 - 3198477
Alignment:
Q  14 ctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaag 69  Q
    ||||||| |||||||||||||||  |||| ||||| |||| |||||||||||||||    
T  3198532 ctgaattatattttattttgttaaaggactaaaattgcaagtttctaatacttaag 3198477  T

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Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 13491550 - 13491481
Alignment:
Q  18 attgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 89  Q
    |||||||||||||||||||||||| |||||||  |||||  ||||| ||||||| | |||||||||||||||    
T  13491550 attgtattttattttgttagggga-caaaatcttaacttcgtaatatttaagggct-aaaactgctattaag 13491481  T

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Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 14816039 - 14816109
Alignment:
Q  19 ttgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 89  Q
    ||||| ||||||| |||||||| |||||||||||||||  | | || || |||| ||||||||||||||||    
T  14816039 ttgtagtttatttagttagggggccaaaatcgcaacttcttgaaacatagggggccaaaactgctattaag 14816109  T

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Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 14983942 - 14984012
Alignment:
Q  19 ttgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 89  Q
    |||||||||| || ||||||||||||||||||||||||  ||| || || |||| ||||| ||| ||||||    
T  14983942 ttgtattttaattagttaggggaccaaaatcgcaacttcttaaaacatacggggccaaaagtgcaattaag 14984012  T

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Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 35180527 - 35180565
Alignment:
Q  19 ttgtattttattttgttaggggaccaaaatcgcaacttt 57  Q
    |||||||||| ||||||||||| ||||||||||||||||    
T  35180527 ttgtattttaatttgttagggggccaaaatcgcaacttt 35180565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 37343724 - 37343686
Alignment:
Q  19 ttgtattttattttgttaggggaccaaaatcgcaacttt 57  Q
    |||||||||| || |||||||||||||||||||||||||    
T  37343724 ttgtattttaattagttaggggaccaaaatcgcaacttt 37343686  T

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Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 272
Target Start/End: Original strand, 16870207 - 16870264
Alignment:
Q  215 aaatgaatcctattaataacttaatgttattgtatgtcaataaagtttattaattttt 272  Q
    ||||| ||||||||||||||| | ||| ||||||| |||| |||||||||| ||||||    
T  16870207 aaatggatcctattaataactcattgtcattgtatttcaacaaagtttattgattttt 16870264  T

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Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 270
Target Start/End: Complemental strand, 43994418 - 43994369
Alignment:
Q  221 atcctattaataacttaatgttattgtatgtcaataaagtttattaattt 270  Q
    ||||||||||||||| ||||| ||||||| |||| |||||||||| ||||    
T  43994418 atcctattaataactcaatgtcattgtatttcaacaaagtttattgattt 43994369  T

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Target: scaffold0286 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 12 - 95
Target Start/End: Complemental strand, 17717 - 17634
Alignment:
Q  12 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaagtataaa 95  Q
    ||||| ||||||||||||||||||||||   |||||||||||||| || ||||| | |||| |||||||||||||||| |||||    
T  17717 ggctggattgtattttattttgttagggtgtcaaaatcgcaacttcctgatactcagggggccaaaactgctattaagcataaa 17634  T

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Target: scaffold0286; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 89
Target Start/End: Original strand, 17911 - 17987
Alignment:
Q  12 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 89  Q
    ||||||| ||||||||| ||| ||||||| |||||||||||||||| | |||||||  || |||||||||||||||||    
T  17911 ggctgaactgtattttactttattagggg-ccaaaatcgcaactttatgatacttagaggatcaaaactgctattaag 17987  T

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Target: scaffold0010 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 128150 - 128226
Alignment:
Q  12 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaa 88  Q
    ||||| |||||||||||||||| || ||| ||||||| |||||||||| |||||||  ||| |||||||||||||||    
T  128150 ggctggattgtattttattttggtaagggcccaaaattgcaactttctgatacttagagggccaaaactgctattaa 128226  T

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Target: scaffold0172 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 9878 - 9948
Alignment:
Q  18 attgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 89  Q
    ||||||||||||||| ||||||| | ||||||||||||| |||||| | | |||||||||||||||||||||    
T  9878 attgtattttattttattaggggtc-aaaatcgcaacttcctaatattaagggggtcaaaactgctattaag 9948  T

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Target: scaffold0172; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 9624 - 9580
Alignment:
Q  12 ggctgaattgtattttattttgttaggggaccaaaatcgcaactt 56  Q
    ||||||||||||||||||||| || | || |||||||||||||||    
T  9624 ggctgaattgtattttattttatttgtgggccaaaatcgcaactt 9580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 89
Target Start/End: Complemental strand, 37862 - 37786
Alignment:
Q  12 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 89  Q
    |||| ||||||||||||||||||||||||  |||||||||||||| || ||||||| ||||  ||||||||| |||||    
T  37862 ggctaaattgtattttattttgttagggg-tcaaaatcgcaacttcctgatacttagggggctaaaactgctgttaag 37786  T

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Target: scaffold0400 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 47
Target Start/End: Complemental strand, 8615 - 8581
Alignment:
Q  13 gctgaattgtattttattttgttaggggaccaaaa 47  Q
    |||||||||||||||||||||||||||| ||||||    
T  8615 gctgaattgtattttattttgttagggggccaaaa 8581  T

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Target: scaffold0365 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 47
Target Start/End: Complemental strand, 9258 - 9224
Alignment:
Q  13 gctgaattgtattttattttgttaggggaccaaaa 47  Q
    |||||||||||||||||||||||||||| ||||||    
T  9258 gctgaattgtattttattttgttagggggccaaaa 9224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 63107 - 63069
Alignment:
Q  19 ttgtattttattttgttaggggaccaaaatcgcaacttt 57  Q
    |||||||||| || |||||||||||||||||||||||||    
T  63107 ttgtattttaattagttaggggaccaaaatcgcaacttt 63069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 63305 - 63343
Alignment:
Q  19 ttgtattttattttgttaggggaccaaaatcgcaacttt 57  Q
    |||||||||| || |||||||||||||||||||||||||    
T  63305 ttgtattttaattagttaggggaccaaaatcgcaacttt 63343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 90
Target Start/End: Original strand, 151600 - 151677
Alignment:
Q  12 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaagt 90  Q
    |||||||||||||||||| |||||||||| | |||||| ||| || || ||||||| | || ||||||||| |||||||    
T  151600 ggctgaattgtattttatattgttagggggctaaaatcacaa-ttcctgatacttaggaggacaaaactgcaattaagt 151677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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