View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1946_low_100 (Length: 302)
Name: NF1946_low_100
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_low_100 |
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Alignment Details
Target: chr8 (Bit Score: 157; Significance: 2e-83; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 37800164 - 37799942
Alignment:
| Q |
1 |
cgctgttaagaatctctctgctgagctttacgcaaaggatgtccatttcctaatggagctcatacaagtacactcattatctttaatttcatcctctttt |
100 |
Q |
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| T |
37800164 |
cgctgttaagaatctctctgctgagctttatgcaaaggatgtccatttcctaatggagctcatacaagtacactcattatctttaatttcatcttctttt |
37800065 |
T |
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| Q |
101 |
ctttctttttgtaatcttgcatgcatgcatgc---------------atatacgttttgaaaattttattttattctttttgagtagcttcagttacgca |
185 |
Q |
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| T |
37800064 |
ctatctttttgtaatcttgcatgcatgcatgcataagtatgaatgatatatacgttttgaaaattttattttattctttttgagtagcttcagttacgca |
37799965 |
T |
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| Q |
186 |
tactacgatcatgctcgttcttc |
208 |
Q |
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||||| ||||||||||||||||| |
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| T |
37799964 |
tactatgatcatgctcgttcttc |
37799942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 252 - 288
Target Start/End: Complemental strand, 37799890 - 37799854
Alignment:
| Q |
252 |
gtaaacagtgcatgattcatagagatttttctttctt |
288 |
Q |
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| T |
37799890 |
gtaaacagtgcatgattcatagagatttttctttctt |
37799854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 73
Target Start/End: Original strand, 3008133 - 3008198
Alignment:
| Q |
8 |
aagaatctctctgctgagctttacgcaaaggatgtccatttcctaatggagctcatacaagtacac |
73 |
Q |
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| T |
3008133 |
aagaatctctctgccgagctttacgccaaagatgttcattttctcatggaactcattcaagtacac |
3008198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 28029405 - 28029338
Alignment:
| Q |
5 |
gttaagaatctctctgctgagctttacgcaaaggatgtccatttcctaatggagctcatacaagtaca |
72 |
Q |
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| T |
28029405 |
gttaagaatctctccgccgagctttatgcaaaagatgttcatttcctgatggaactgattcaagtaca |
28029338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 1502098 - 1502166
Alignment:
| Q |
2 |
gctgttaagaatctctctgctgagctttacgcaaaggatgtccatttcctaatggagctcatacaagta |
70 |
Q |
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| T |
1502098 |
gctgtcaagaatctctcagctgaactttatgcaaaagatgttcattttcttatggagcttattcaagta |
1502166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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