View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1946_low_107 (Length: 289)

Name: NF1946_low_107
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1946_low_107
NF1946_low_107
[»] chr1 (22 HSPs)
chr1 (44-279)||(35309391-35309622)
chr1 (43-279)||(36418880-36419114)
chr1 (43-272)||(47602989-47603216)
chr1 (43-271)||(37441313-37441539)
chr1 (43-214)||(24469944-24470113)
chr1 (43-163)||(32179752-32179871)
chr1 (1-51)||(24469873-24469923)
chr1 (1-51)||(47602918-47602968)
chr1 (2-51)||(37441243-37441292)
chr1 (1-51)||(7702869-7702919)
chr1 (1-51)||(32179892-32179942)
chr1 (232-276)||(32179680-32179724)
chr1 (42-102)||(46265070-46265130)
chr1 (1-47)||(36419139-36419185)
chr1 (42-102)||(7596347-7596407)
chr1 (42-102)||(23916764-23916824)
chr1 (42-102)||(25125011-25125071)
chr1 (42-102)||(42916240-42916300)
chr1 (42-102)||(42937028-42937088)
chr1 (43-102)||(7702789-7702848)
chr1 (42-102)||(35810672-35810732)
chr1 (42-102)||(40002848-40002908)
[»] scaffold0316 (2 HSPs)
scaffold0316 (43-272)||(19082-19309)
scaffold0316 (2-51)||(19330-19379)
[»] chr4 (32 HSPs)
chr4 (43-279)||(49820763-49820995)
chr4 (43-272)||(53369474-53369701)
chr4 (43-272)||(12789679-12789906)
chr4 (43-272)||(44791370-44791588)
chr4 (43-272)||(45674630-45674848)
chr4 (43-190)||(19852846-19852991)
chr4 (175-270)||(19850517-19850612)
chr4 (43-198)||(48977436-48977589)
chr4 (43-178)||(53369752-53369885)
chr4 (43-242)||(50605841-50606021)
chr4 (43-102)||(21441535-21441594)
chr4 (158-233)||(49378093-49378168)
chr4 (1-51)||(53369906-53369956)
chr4 (2-51)||(21441615-21441664)
chr4 (2-51)||(50606042-50606091)
chr4 (1-51)||(19853012-19853062)
chr4 (1-51)||(49821016-49821066)
chr4 (2-51)||(45674869-45674918)
chr4 (232-276)||(48977390-48977434)
chr4 (2-51)||(12789609-12789658)
chr4 (2-51)||(44791300-44791349)
chr4 (7-51)||(22184537-22184581)
chr4 (43-102)||(9469731-9469790)
chr4 (43-89)||(43798350-43798396)
chr4 (1-51)||(48977610-48977660)
chr4 (43-88)||(22721296-22721341)
chr4 (43-88)||(24008030-24008075)
chr4 (42-91)||(48339225-48339274)
chr4 (43-99)||(43387225-43387281)
chr4 (42-102)||(43812183-43812243)
chr4 (43-99)||(52813558-52813614)
chr4 (7-51)||(52813635-52813679)
[»] chr7 (37 HSPs)
chr7 (43-279)||(15434027-15434261)
chr7 (1-279)||(388771-389035)
chr7 (43-272)||(48505915-48506142)
chr7 (43-279)||(43052665-43052890)
chr7 (43-272)||(3930843-3931070)
chr7 (43-272)||(5795063-5795281)
chr7 (43-242)||(37334099-37334296)
chr7 (43-272)||(42071883-42072101)
chr7 (44-230)||(26216106-26216289)
chr7 (43-279)||(36926782-36927017)
chr7 (160-272)||(45174980-45175092)
chr7 (158-276)||(7444176-7444294)
chr7 (213-279)||(28950018-28950084)
chr7 (43-106)||(5776257-5776320)
chr7 (43-106)||(28949885-28949948)
chr7 (43-104)||(665974-666035)
chr7 (2-51)||(42072122-42072171)
chr7 (1-51)||(5776186-5776236)
chr7 (1-51)||(37334317-37334367)
chr7 (2-51)||(5794993-5795042)
chr7 (43-102)||(45176204-45176263)
chr7 (1-51)||(26216311-26216361)
chr7 (2-51)||(3930773-3930822)
chr7 (2-51)||(48505845-48505894)
chr7 (1-51)||(665903-665953)
chr7 (2-48)||(28949815-28949861)
chr7 (2-48)||(36927041-36927087)
chr7 (1-47)||(43052915-43052961)
chr7 (43-102)||(20400955-20401014)
chr7 (1-51)||(45176284-45176334)
chr7 (42-102)||(3942135-3942195)
chr7 (19-51)||(15434282-15434314)
chr7 (7-51)||(33935547-33935591)
chr7 (7-51)||(44421963-44422007)
chr7 (43-99)||(44422029-44422085)
chr7 (43-89)||(222353-222399)
chr7 (43-88)||(30919395-30919440)
[»] chr6 (12 HSPs)
chr6 (43-272)||(10346507-10346734)
chr6 (43-272)||(8200428-8200655)
chr6 (164-274)||(7957426-7957536)
chr6 (2-51)||(10346755-10346804)
chr6 (1-38)||(8200678-8200715)
chr6 (42-102)||(9950886-9950946)
chr6 (42-102)||(10961922-10961982)
chr6 (43-106)||(4441428-4441491)
chr6 (42-85)||(5640378-5640421)
chr6 (43-88)||(3081845-3081890)
chr6 (43-88)||(7437272-7437317)
chr6 (42-102)||(27985016-27985076)
[»] chr2 (25 HSPs)
chr2 (43-272)||(41958929-41959156)
chr2 (43-272)||(36538442-36538669)
chr2 (43-272)||(34064500-34064718)
chr2 (163-279)||(26436154-26436270)
chr2 (43-242)||(33831252-33831440)
chr2 (158-272)||(27633526-27633640)
chr2 (43-106)||(26436304-26436367)
chr2 (43-93)||(33831458-33831508)
chr2 (2-51)||(41959177-41959226)
chr2 (43-92)||(27634635-27634684)
chr2 (2-51)||(33164037-33164086)
chr2 (1-51)||(27634705-27634755)
chr2 (2-51)||(33831529-33831578)
chr2 (2-51)||(34064739-34064788)
chr2 (2-51)||(36538690-36538739)
chr2 (216-276)||(20986446-20986506)
chr2 (1-51)||(26436388-26436438)
chr2 (42-102)||(34116299-34116359)
chr2 (42-102)||(39690124-39690184)
chr2 (42-91)||(11027873-11027922)
chr2 (42-91)||(27902564-27902613)
chr2 (43-88)||(29806885-29806930)
chr2 (43-88)||(40458889-40458934)
chr2 (7-48)||(44740545-44740586)
chr2 (7-51)||(24844728-24844772)
[»] chr3 (15 HSPs)
chr3 (43-272)||(41609673-41609901)
chr3 (43-272)||(32688964-32689182)
chr3 (43-272)||(23206434-23206662)
chr3 (158-276)||(39134142-39134260)
chr3 (1-51)||(41609922-41609972)
chr3 (2-51)||(32689203-32689252)
chr3 (7-102)||(45714679-45714774)
chr3 (1-51)||(23206364-23206414)
chr3 (43-102)||(44574480-44574539)
chr3 (1-51)||(52199463-52199513)
chr3 (43-89)||(33896797-33896843)
chr3 (1-51)||(39942856-39942906)
chr3 (47-99)||(28242540-28242592)
chr3 (43-99)||(52199346-52199402)
chr3 (42-102)||(54393569-54393629)
[»] chr5 (16 HSPs)
chr5 (43-272)||(18879980-18880205)
chr5 (53-272)||(22921836-22922053)
chr5 (43-272)||(27905883-27906111)
chr5 (119-272)||(29327819-29327973)
chr5 (164-274)||(3805058-3805168)
chr5 (2-51)||(27906132-27906181)
chr5 (1-51)||(29328078-29328127)
chr5 (2-51)||(18880226-18880275)
chr5 (59-105)||(29327991-29328037)
chr5 (42-102)||(20190710-20190770)
chr5 (42-92)||(20188937-20188987)
chr5 (43-106)||(19282241-19282304)
chr5 (43-102)||(31620822-31620881)
chr5 (43-88)||(10493953-10493998)
chr5 (7-51)||(1840749-1840793)
chr5 (7-51)||(19282176-19282220)
[»] chr8 (6 HSPs)
chr8 (43-242)||(11161397-11161585)
chr8 (43-259)||(453289-453496)
chr8 (1-51)||(11161606-11161656)
chr8 (2-51)||(453517-453566)
chr8 (42-102)||(34516092-34516152)
chr8 (42-78)||(10749345-10749381)
[»] scaffold0224 (1 HSPs)
scaffold0224 (42-102)||(7434-7494)
[»] scaffold0204 (1 HSPs)
scaffold0204 (42-91)||(26747-26796)


Alignment Details
Target: chr1 (Bit Score: 167; Significance: 2e-89; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 44 - 279
Target Start/End: Complemental strand, 35309622 - 35309391
Alignment:
Q  44 gagctgaacttgagctacatatagttcgactcgttaggttcatgagatggttcgattatcgatnnnnnnnnnnnnaatcaatttgagttagtttttaaaa 143  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||            |||||||||||||||||||||||||    
T  35309622 gagctgaacttgagctacatatagttcgactcgttaggttcatgagatggctcgcttatcgattatatata----aatcaatttgagttagtttttaaaa 35309527  T
Q  144 ttttttaattcaaatgtggcaaatgtcgctgaatacaattttgtcttgaagggaagagcagttgaagtttaaaagtaaaagaatattatgaattttgttc 243  Q
    |||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35309526 ttttttaattcaaatgtggcaaatgtggctgaattcaattttgtcttaaagggaagagcagttgaagtttaaaagtaaaagaatattatgaattttgttc 35309427  T
Q  244 acaactaattgaattttgttggattttttgtctctg 279  Q
    ||| ||||||||||||||||| ||||||||||||||    
T  35309426 acagctaattgaattttgttgaattttttgtctctg 35309391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 43 - 279
Target Start/End: Complemental strand, 36419114 - 36418880
Alignment:
Q  43 tgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggttcgattatcgatnnnnnnnnnnnnaatcaatttgagttagtttttaaa 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||            ||||||||||| ||||||||||||    
T  36419114 tgagctgaacttgagctacatatagttcgactcgttaggttcatgagatgactcgattatcgattatatatata--aatcaatttgaattagtttttaaa 36419017  T
Q  143 attttttaattcaaatgtggcaaatgtcgctgaatacaattttgtcttgaagggaagagcagttgaagtttaaaagtaaaagaatattatgaattttgtt 242  Q
     |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  36419016 tttttttaattcaaatgtggcaaatgtggctgaatacaattttgtcttgaagggaagagcagttggagtttaaaagtaaaataatattatgaattttgtt 36418917  T
Q  243 cacaactaattgaattttgttggattttttgtctctg 279  Q
    |||| |||||||||||||||| |||||||||||||||    
T  36418916 cacagctaattgaattttgtttgattttttgtctctg 36418880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 43 - 272
Target Start/End: Original strand, 47602989 - 47603216
Alignment:
Q  43 tgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggttcgattatcgatnnnnnnnnnnnnaatcaatttgagttagtttttaaa 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||            ||||||||||||||||||||||||    
T  47602989 tgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggctcgattatcgattatatatata--aatcaatttgagttagtttttaaa 47603086  T
Q  143 attttttaattcaaatgtggcaaatgtcgctgaatacaattttgtcttgaagggaagagcagttgaagtttaaaagtaaaagaatattatgaattttgtt 242  Q
    |   ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  47603087 aaaatttaattcaaatgtggcaaatgtggttgaatacaattttgtcttgaagggaagagcagttggagtttaaaagtaaaagaatattatgaattttgtt 47603186  T
Q  243 cacaactaattgaattttgttggatttttt 272  Q
    |||| |||||||||||||||||||||||||    
T  47603187 cacagctaattgaattttgttggatttttt 47603216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 43 - 271
Target Start/End: Original strand, 37441313 - 37441539
Alignment:
Q  43 tgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggttcgattatcgatnnnnnnnnnnnnaatcaatttgagttagtttttaaa 142  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||            ||||||||||||||||||||||||    
T  37441313 tgagctgaacttgagctacatatagttcgactcgttaggttaatgagatgtctcgattatcgattatatatata--aatcaatttgagttagtttttaaa 37441410  T
Q  143 attttttaattcaaatgtggcaaatgtcgctgaatacaattttgtcttgaagggaagagcagttgaagtttaaaagtaaaagaatattatgaattttgtt 242  Q
    |   ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  37441411 aaaatttaattcaaatgtggcaaatgtggctgaatacaattttgtcttgaagggaagagcagttggagtttaaaagtaaaagaatattatgaattttgtt 37441510  T
Q  243 cacaactaattgaattttgttggattttt 271  Q
    |||| ||||||||||||||||||||||||    
T  37441511 cacagctaattgaattttgttggattttt 37441539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 43 - 214
Target Start/End: Original strand, 24469944 - 24470113
Alignment:
Q  43 tgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggttcgattatcgatnnnnnnnnnnnnaatcaatttgagttagtttttaaa 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||            ||||||||||||||||||||||||    
T  24469944 tgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggctcgattatcgattatatatata--aatcaatttgagttagtttttaaa 24470041  T
Q  143 attttttaattcaaatgtggcaaatgtcgctgaatacaattttgtcttgaagggaagagcagttgaagttta 214  Q
    |   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  24470042 aaaatttaattcaaatgtggcaaatgtcgctgaatacaattttgtcttgaagggaagagcagttggagttta 24470113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 43 - 163
Target Start/End: Complemental strand, 32179871 - 32179752
Alignment:
Q  43 tgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggttcgattatcgatnnnnnnnnnnnnaatcaatttgagttagtttttaaa 142  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||  || |||||||||            ||||||||||||||||||||||||    
T  32179871 tgagctgaacttgagctacatatagttcgactcgttcggttcatgagatgactcaattatcgat--tatatatataaatcaatttgagttagtttttaaa 32179774  T
Q  143 -attttttaattcaaatgtggc 163  Q
      ||||||||||||||||||||    
T  32179773 ttttttttaattcaaatgtggc 32179752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 24469873 - 24469923
Alignment:
Q  1 ttaatccgttgaacttgattcatgaacctaacgagctggacttgagctgaa 51  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  24469873 ttaatccgttgaacttggttcatgaacctaacgagctggacttgagctgaa 24469923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 47602918 - 47602968
Alignment:
Q  1 ttaatccgttgaacttgattcatgaacctaacgagctggacttgagctgaa 51  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  47602918 ttaatccgttgaacttggttcatgaacctaacgagctggacttgagctgaa 47602968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 37441243 - 37441292
Alignment:
Q  2 taatccgttgaacttgattcatgaacctaacgagctggacttgagctgaa 51  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  37441243 taatccgttgaacttggttcatgaacctaacgagctggacttgagctgaa 37441292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 7702919 - 7702869
Alignment:
Q  1 ttaatccgttgaacttgattcatgaacctaacgagctggacttgagctgaa 51  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  7702919 ttaatccgttgaacttggttcatgaagctaacgagctggacttgagctgaa 7702869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 32179942 - 32179892
Alignment:
Q  1 ttaatccgttgaacttgattcatgaacctaacgagctggacttgagctgaa 51  Q
    ||||||||||||||||| ||||| ||||||| |||||||||||||||||||    
T  32179942 ttaatccgttgaacttggttcataaacctaatgagctggacttgagctgaa 32179892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 232 - 276
Target Start/End: Complemental strand, 32179724 - 32179680
Alignment:
Q  232 tgaattttgttcacaactaattgaattttgttggattttttgtct 276  Q
    ||||||||||||||| || ||||||||||||||||||||||||||    
T  32179724 tgaattttgttcacagcttattgaattttgttggattttttgtct 32179680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 42 - 102
Target Start/End: Original strand, 46265070 - 46265130
Alignment:
Q  42 ttgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggttcgattat 102  Q
    ||||||||||||||| ||| |||||| |||||||||| |||||||||||||  ||||||||    
T  46265070 ttgagctgaacttgaactatatataggtcgactcgtttggttcatgagatgactcgattat 46265130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 36419185 - 36419139
Alignment:
Q  1 ttaatccgttgaacttgattcatgaacctaacgagctggacttgagc 47  Q
    ||||||||| ||||||| ||||||||||||| |||||||||||||||    
T  36419185 ttaatccgtcgaacttggttcatgaacctaatgagctggacttgagc 36419139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 102
Target Start/End: Complemental strand, 7596407 - 7596347
Alignment:
Q  42 ttgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggttcgattat 102  Q
    ||||||||||||||| ||| || |||||||||||||| | |||||||||||  ||||||||    
T  7596407 ttgagctgaacttgaactatatgtagttcgactcgtttgattcatgagatgactcgattat 7596347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 102
Target Start/End: Complemental strand, 23916824 - 23916764
Alignment:
Q  42 ttgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggttcgattat 102  Q
    ||||||||||||||||| | || |||||||||||||| |||||| ||||||  ||||||||    
T  23916824 ttgagctgaacttgagcaatatgtagttcgactcgtttggttcacgagatgactcgattat 23916764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 102
Target Start/End: Original strand, 25125011 - 25125071
Alignment:
Q  42 ttgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggttcgattat 102  Q
    ||||||||||||||||||| || ||||||  |||||| |||||| |||||| |||||||||    
T  25125011 ttgagctgaacttgagctatatgtagttcagctcgtttggttcacgagatgattcgattat 25125071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 102
Target Start/End: Original strand, 42916240 - 42916300
Alignment:
Q  42 ttgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggttcgattat 102  Q
    ||||||||||||||| | | |||||| |||||||||| |||||||||||||  ||||||||    
T  42916240 ttgagctgaacttgaaccatatataggtcgactcgtttggttcatgagatgactcgattat 42916300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 102
Target Start/End: Complemental strand, 42937088 - 42937028
Alignment:
Q  42 ttgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggttcgattat 102  Q
    |||||||||||||||||||  |||||||| ||||||| |||||| ||||||  ||||||||    
T  42937088 ttgagctgaacttgagctatgtatagttcaactcgtttggttcacgagatgaatcgattat 42937028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 43 - 102
Target Start/End: Complemental strand, 7702848 - 7702789
Alignment:
Q  43 tgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggttcgattat 102  Q
    |||||||||||| ||||||  ||| ||| |||||||||||||||||||| | ||||||||    
T  7702848 tgagctgaacttaagctacgcataattctactcgttaggttcatgagatagctcgattat 7702789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 102
Target Start/End: Complemental strand, 35810732 - 35810672
Alignment:
Q  42 ttgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggttcgattat 102  Q
    |||||| |||||||| ||| || |||||||||||||| |||||| ||||||  ||||||||    
T  35810732 ttgagccgaacttgaactatatgtagttcgactcgtttggttcacgagatgactcgattat 35810672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 102
Target Start/End: Complemental strand, 40002908 - 40002848
Alignment:
Q  42 ttgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggttcgattat 102  Q
    ||||| ||||||||||||| || |||||||||||||| | |||| ||||||  ||||||||    
T  40002908 ttgagttgaacttgagctatatgtagttcgactcgtttgattcacgagatgactcgattat 40002848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 43 - 272
Target Start/End: Complemental strand, 19309 - 19082
Alignment:
Q  43 tgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggttcgattatcgatnnnnnnnnnnnnaatcaatttgagttagtttttaaa 142  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||            ||||||||||||||||||||||||    
T  19309 tgagctgaacttgagctacatataattcgactcgttaggttcatgagatggctcgattattgattatatatata--aatcaatttgagttagtttttaaa 19212  T
Q  143 attttttaattcaaatgtggcaaatgtcgctgaatacaattttgtcttgaagggaagagcagttgaagtttaaaagtaaaagaatattatgaattttgtt 242  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  19211 attttttaattcaaatgtggcaaatgtggctgaatacaattttgtcttgaagggaagagcagttggagtttaaaagtaaaagaatattatgaattttgtt 19112  T
Q  243 cacaactaattgaattttgttggatttttt 272  Q
    ||||||||||| ||||||||||||||||||    
T  19111 cacaactaattaaattttgttggatttttt 19082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 19379 - 19330
Alignment:
Q  2 taatccgttgaacttgattcatgaacctaacgagctggacttgagctgaa 51  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  19379 taatcctttgaacttggttcatgaacctaacgagctggacttgagctgaa 19330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 164; Significance: 1e-87; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 43 - 279
Target Start/End: Complemental strand, 49820995 - 49820763
Alignment:
Q  43 tgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggttcgattatcgatnnnnnnnnnnnnaatcaatttgagttagtttttaaa 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||            ||||||||||||||||||||||||    
T  49820995 tgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggctcgattatcgattatatata----aatcaatttgagttagtttttaaa 49820900  T
Q  143 attttttaattcaaatgtggcaaatgtcgctgaatacaattttgtcttgaagggaagagcagttgaagtttaaaagtaaaagaatattatgaattttgtt 242  Q
    |   ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49820899 aaaatttaattcaaatgtgacaaatgtggctgaatacaattttgtcttgaagggaagagcagttgaagtttaaaagtaaaagaatattatgaattttgtt 49820800  T
Q  243 cacaactaattgaattttgttggattttttgtctctg 279  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  49820799 cacaactaattgaattttgttgaattttttatctctg 49820763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 43 - 272
Target Start/End: Complemental strand, 53369701 - 53369474
Alignment:
Q  43 tgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggttcgattatcgatnnnnnnnnnnnnaatcaatttgagttagtttttaaa 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||            ||||||||||||||||||||||||    
T  53369701 tgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggctcgattatcgattatatatata--aatcaatttgagttagtttttaaa 53369604  T
Q  143 attttttaattcaaatgtggcaaatgtcgctgaatacaattttgtcttgaagggaagagcagttgaagtttaaaagtaaaagaatattatgaattttgtt 242  Q
    |    |||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  53369603 aaaaattaattcaaatgtggcaaatgtggttgaatacaattttgtcttgaaaggaagagcagttggagtttaaaagtaaaagaatattatgaattttgtt 53369504  T
Q  243 cacaactaattgaattttgttggatttttt 272  Q
    |||| |||||||||||||||||||||||||    
T  53369503 cacagctaattgaattttgttggatttttt 53369474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 43 - 272
Target Start/End: Original strand, 12789679 - 12789906
Alignment:
Q  43 tgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggttcgattatcgatnnnnnnnnnnnnaatcaatttgagttagtttttaaa 142  Q
    |||||||||||||||||||||||||||| ||| ||||||   ||||||||| |||||||| |||            ||||||||||||||||||||| ||    
T  12789679 tgagctgaacttgagctacatatagttcaactagttaggaaaatgagatggctcgattattgattatatatata--aatcaatttgagttagttttttaa 12789776  T
Q  143 attttttaattcaaatgtggcaaatgtcgctgaatacaattttgtcttgaagggaagagcagttgaagtttaaaagtaaaagaatattatgaattttgtt 242  Q
    |    ||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  12789777 aaaaattatttcaaatgtggcaaatgtggctgaatacaattttgtcttgaaggaaagagcagttggagtttaaaagtaaaagaatattatgaattttgtt 12789876  T
Q  243 cacaactaattgaattttgttggatttttt 272  Q
    ||||||||||||||||||||||||||||||    
T  12789877 cacaactaattgaattttgttggatttttt 12789906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 43 - 272
Target Start/End: Original strand, 44791370 - 44791588
Alignment:
Q  43 tgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggttcgattatcgatnnnnnnnnnnnnaatcaatttgagttagtttttaaa 142  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||||| |||            ||||||||||||||||||||||||    
T  44791370 tgagctgaatttgagctacatatagttcgactcgttaggttcatgagatgactcgattattgattatatatata--aatcaatttgagttagtttttaaa 44791467  T
Q  143 attttttaattcaaatgtggcaaatgtcgctgaatacaattttgtcttgaagggaagagcagttgaagtttaaaagtaaaagaatattatgaattttgtt 242  Q
    |    ||||||||||||||||         ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  44791468 aaaaattaattcaaatgtggc---------tgaatacaattttgtcttgaagggaagagcagttggagtttaaaagtaaaagaatattatgaattttgtt 44791558  T
Q  243 cacaactaattgaattttgttggatttttt 272  Q
    ||||||||||| ||||||||||||||||||    
T  44791559 cacaactaattaaattttgttggatttttt 44791588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 43 - 272
Target Start/End: Complemental strand, 45674848 - 45674630
Alignment:
Q  43 tgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggttcgattatcgatnnnnnnnnnnnnaatcaatttgagttagtttttaaa 142  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||            ||||||||||||||||||||||||    
T  45674848 tgagttgaacttgagctacatatagttcgactcgttaggttcatgagatggctcgattatcgattatatatata--aatcaatttgagttagtttttaaa 45674751  T
Q  143 attttttaattcaaatgtggcaaatgtcgctgaatacaattttgtcttgaagggaagagcagttgaagtttaaaagtaaaagaatattatgaattttgtt 242  Q
    |    ||||||| |||||||          ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  45674750 aaaaattaattctaatgtggt---------tgaatacaattttgtcttgaagggaagagcaattggagtttaaaagtaaaagaatattatgaattttgtt 45674660  T
Q  243 cacaactaattgaattttgttggatttttt 272  Q
    ||||||||||||||||||||||||| ||||    
T  45674659 cacaactaattgaattttgttggatgtttt 45674630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 43 - 190
Target Start/End: Complemental strand, 19852991 - 19852846
Alignment:
Q  43 tgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggttcgattatcgatnnnnnnnnnnnnaatcaatttgagttagtttttaaa 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||            ||||||||||||||||||||||||    
T  19852991 tgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggctcgattatcgattatatatata--aatcaatttgagttagtttttaaa 19852894  T
Q  143 attttttaattcaaatgtggcaaatgtcgctgaatacaattttgtctt 190  Q
    ||||||||||||||||||||||||||| ||| ||||||||||| ||||    
T  19852893 attttttaattcaaatgtggcaaatgtggcttaatacaattttctctt 19852846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 175 - 270
Target Start/End: Complemental strand, 19850612 - 19850517
Alignment:
Q  175 aatacaattttgtcttgaagggaagagcagttgaagtttaaaagtaaaagaatattatgaattttgttcacaactaattgaattttgttggatttt 270  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19850612 aatacaattttctcttgaagggaagagcagttggagtttaaaagtaaaagaatattatgaattttgttcacaactaattgaattttgttggatttt 19850517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 43 - 198
Target Start/End: Complemental strand, 48977589 - 48977436
Alignment:
Q  43 tgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggttcgattatcgatnnnnnnnnnnnnaatcaatttgagttagtttttaaa 142  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||            |||||||||||||||||||||||     
T  48977589 tgagctgaacttgagctacatatagttcgactcgttcggttcatgagatagctcgattatcgattatatatata--aatcaatttgagttagtttttaat 48977492  T
Q  143 attttttaattcaaatgtggcaaatgtcgctgaatacaattttgtcttgaagggaa 198  Q
     |||||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  48977491 tttttttaattcaaatgtggcaaatgtggccgaatacaattttgtcttgaagggaa 48977436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 43 - 178
Target Start/End: Complemental strand, 53369885 - 53369752
Alignment:
Q  43 tgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggttcgattatcgatnnnnnnnnnnnnaatcaatttgagttagtttttaaa 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||            ||||||||||||||||||||||||    
T  53369885 tgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggctcgattatcgat--tatatatataaatcaatttgagttagtttttaaa 53369788  T
Q  143 attttttaattcaaatgtggcaaatgtcgctgaata 178  Q
    |  |||||||||||||||||||||||| | ||||||    
T  53369787 aaattttaattcaaatgtggcaaatgtggttgaata 53369752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 43 - 242
Target Start/End: Complemental strand, 50606021 - 50605841
Alignment:
Q  43 tgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggttcgattatcgatnnnnnnnnnnnnaatcaatttgagttagtttttaaa 142  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||            ||||||||||||||||||||||||    
T  50606021 tgagctgaacttgagctacatatagttcgactcgttaggtttatgagatggctcgattattgattatatatata--aatcaatttgagttagtttttaaa 50605924  T
Q  143 attttttaattcaaatgtggcaaatgtcgctgaatacaattttgtcttgaagggaagagcagttgaagtttaaaagtaaaagaatattatgaattttgtt 242  Q
    |||                 ||||||| ||||||||||||||||||||||| ||||||||| ||| | |||||||||||||||||||| |||||||||||    
T  50605923 att-----------------caaatgtggctgaatacaattttgtcttgaatggaagagcaattggaatttaaaagtaaaagaatattgtgaattttgtt 50605841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 43 - 102
Target Start/End: Complemental strand, 21441594 - 21441535
Alignment:
Q  43 tgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggttcgattat 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  21441594 tgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggctcgattat 21441535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 158 - 233
Target Start/End: Original strand, 49378093 - 49378168
Alignment:
Q  158 tgtggcaaatgtcgctgaatacaattttgtcttgaagggaagagcagttgaagtttaaaagtaaaagaatattatg 233  Q
    |||||||||||| |||||||||||||||||||| |||||||||||| ||| |||||  ||||| ||||||||||||    
T  49378093 tgtggcaaatgtggctgaatacaattttgtctttaagggaagagcaattggagtttggaagtagaagaatattatg 49378168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 53369956 - 53369906
Alignment:
Q  1 ttaatccgttgaacttgattcatgaacctaacgagctggacttgagctgaa 51  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  53369956 ttaatccgttgaacttggttcatgaacctaacgagctggacttgagctgaa 53369906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 21441664 - 21441615
Alignment:
Q  2 taatccgttgaacttgattcatgaacctaacgagctggacttgagctgaa 51  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  21441664 taatccgttgaacttggttcatgaacctaacgagctggacttgagctgaa 21441615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 50606091 - 50606042
Alignment:
Q  2 taatccgttgaacttgattcatgaacctaacgagctggacttgagctgaa 51  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  50606091 taatccgttgaacttggttcatgaacctaacgagctggacttgagctgaa 50606042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 19853062 - 19853012
Alignment:
Q  1 ttaatccgttgaacttgattcatgaacctaacgagctggacttgagctgaa 51  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  19853062 ttaatccgttgaacttggttcatgaacctaacgagatggacttgagctgaa 19853012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 49821066 - 49821016
Alignment:
Q  1 ttaatccgttgaacttgattcatgaacctaacgagctggacttgagctgaa 51  Q
    ||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  49821066 ttaatccgttgaacttggttcatgaacctaacgagctggacttaagctgaa 49821016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 45674918 - 45674869
Alignment:
Q  2 taatccgttgaacttgattcatgaacctaacgagctggacttgagctgaa 51  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  45674918 taatccgtcgaacttggttcatgaacctaacgagctggacttgagctgaa 45674869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 232 - 276
Target Start/End: Complemental strand, 48977434 - 48977390
Alignment:
Q  232 tgaattttgttcacaactaattgaattttgttggattttttgtct 276  Q
    ||||||||||||||| |||||||||||||||||||||||||||||    
T  48977434 tgaattttgttcacagctaattgaattttgttggattttttgtct 48977390  T

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Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 12789609 - 12789658
Alignment:
Q  2 taatccgttgaacttgattcatgaacctaacgagctggacttgagctgaa 51  Q
    |||||||||||||||| || ||||||||||||||||| ||||||||||||    
T  12789609 taatccgttgaacttggtttatgaacctaacgagctgaacttgagctgaa 12789658  T

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Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 44791300 - 44791349
Alignment:
Q  2 taatccgttgaacttgattcatgaacctaacgagctggacttgagctgaa 51  Q
    |||||||||||||||| |||||||||||||||||||| |||||| |||||    
T  44791300 taatccgttgaacttggttcatgaacctaacgagctgcacttgaactgaa 44791349  T

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Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 22184581 - 22184537
Alignment:
Q  7 cgttgaacttgattcatgaacctaacgagctggacttgagctgaa 51  Q
    ||||||||||| |||||||||| ||||||||| ||||||||||||    
T  22184581 cgttgaacttggttcatgaaccaaacgagctgaacttgagctgaa 22184537  T

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Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 43 - 102
Target Start/End: Complemental strand, 9469790 - 9469731
Alignment:
Q  43 tgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggttcgattat 102  Q
    |||||||||||||| ||| | || |||||| |||||||||||||||||||  ||||||||    
T  9469790 tgagctgaacttgaactatagatggttcgattcgttaggttcatgagatgactcgattat 9469731  T

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Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 89
Target Start/End: Original strand, 43798350 - 43798396
Alignment:
Q  43 tgagctgaacttgagctacatatagttcgactcgttaggttcatgag 89  Q
    |||| |||||||||||||  |||||||||||||||| ||||||||||    
T  43798350 tgagttgaacttgagctatgtatagttcgactcgtttggttcatgag 43798396  T

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Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 48977660 - 48977610
Alignment:
Q  1 ttaatccgttgaacttgattcatgaacctaacgagctggacttgagctgaa 51  Q
    ||||| ||||||||||  ||||||||||||| ||||||||| |||||||||    
T  48977660 ttaattcgttgaacttcgttcatgaacctaatgagctggacatgagctgaa 48977610  T

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Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 88
Target Start/End: Complemental strand, 22721341 - 22721296
Alignment:
Q  43 tgagctgaacttgagctacatatagttcgactcgttaggttcatga 88  Q
    |||| |||||||||| || ||||||||||||||||| |||||||||    
T  22721341 tgagttgaacttgagttatatatagttcgactcgtttggttcatga 22721296  T

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Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 88
Target Start/End: Original strand, 24008030 - 24008075
Alignment:
Q  43 tgagctgaacttgagctacatatagttcgactcgttaggttcatga 88  Q
    |||| ||||||||||||| |||| |||||||||||| |||||||||    
T  24008030 tgagttgaacttgagctaaatatggttcgactcgtttggttcatga 24008075  T

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Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 91
Target Start/End: Original strand, 48339225 - 48339274
Alignment:
Q  42 ttgagctgaacttgagctacatatagttcgactcgttaggttcatgagat 91  Q
    ||||||||||||| ||||| || |||||||||||||| |||||| |||||    
T  48339225 ttgagctgaacttaagctatatgtagttcgactcgtttggttcacgagat 48339274  T

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Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 99
Target Start/End: Complemental strand, 43387281 - 43387225
Alignment:
Q  43 tgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggttcgat 99  Q
    |||||||||||||| ||  ||||||||||||||| | |||||||||| ||| |||||    
T  43387281 tgagctgaacttgaactttatatagttcgactcggttggttcatgagttggctcgat 43387225  T

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Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 102
Target Start/End: Original strand, 43812183 - 43812243
Alignment:
Q  42 ttgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggttcgattat 102  Q
    ||||||||||||||| ||| || ||||||||||||||  ||||| ||||||  ||||||||    
T  43812183 ttgagctgaacttgaactagatgtagttcgactcgtttagttcacgagatgactcgattat 43812243  T

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Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 99
Target Start/End: Complemental strand, 52813614 - 52813558
Alignment:
Q  43 tgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggttcgat 99  Q
    |||||||||||||||||  ||||||||||| ||| | |||||||||| ||| |||||    
T  52813614 tgagctgaacttgagctttatatagttcgattcggttggttcatgagttggctcgat 52813558  T

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Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 52813679 - 52813635
Alignment:
Q  7 cgttgaacttgattcatgaacctaacgagctggacttgagctgaa 51  Q
    ||||||||||| |||||||||| ||||||||| |||| |||||||    
T  52813679 cgttgaacttggttcatgaaccaaacgagctgaacttaagctgaa 52813635  T

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Target: chr7 (Bit Score: 160; Significance: 3e-85; HSPs: 37)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 43 - 279
Target Start/End: Complemental strand, 15434261 - 15434027
Alignment:
Q  43 tgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggttcgattatcgatnnnnnnnnnnnnaatcaatttgagttagtttttaaa 142  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||            ||||||||| ||||||||||||||    
T  15434261 tgagctgaacttgagctacatctagttcgactcgttagcttcatgagatggctcgattatcgattatatatata--aatcaattttagttagtttttaaa 15434164  T
Q  143 attttttaattcaaatgtggcaaatgtcgctgaatacaattttgtcttgaagggaagagcagttgaagtttaaaagtaaaagaatattatgaattttgtt 242  Q
     ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  15434163 ttttattaattcaaatgtggcaaatgtggctgaatacaattttgtcttgaagggaagagcagtgggagtttaaaagtaaaagaatattatgaattttgtt 15434064  T
Q  243 cacaactaattgaattttgttggattttttgtctctg 279  Q
    |||||||||||||||||||||||||||||||||||||    
T  15434063 cacaactaattgaattttgttggattttttgtctctg 15434027  T

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Target: chr7; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 389035 - 388771
Alignment:
Q  1 ttaatccgttgaacttgattcatgaacctaacgagctggacttgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggttcgatt 100  Q
    ||||||||||||||||| ||||||||||||||||||||           |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  389035 ttaatccgttgaacttggttcatgaacctaacgagctg-----------aacttgagctacatatagttcgactcgttaggttcatgagatggctcgatt 388947  T
Q  101 atcgatnnnnnnnnnnnnaatcaatttgagttagtttttaaaattttttaattcaaatgtggcaaatgtcgctgaatacaattttgtcttgaagggaaga 200  Q
    ||||||            |||||||||||||||||||||||||   |||||||||||||||||||||| |||||||||||||||||||||||||||| ||    
T  388946 atcgattatatatata--aatcaatttgagttagtttttaaaaaaatttaattcaaatgtggcaaatggcgctgaatacaattttgtcttgaaggga-ga 388850  T
Q  201 gcagttgaagtttaaaagtaaaagaatattatgaattttgttcacaactaattgaattttgttggattttttgtctctg 279  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  388849 gcagttggagtttaaaagtaaaagaatattatgaattttgttcacagctaattgaattttgtttgattttttgtctctg 388771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 43 - 272
Target Start/End: Original strand, 48505915 - 48506142
Alignment:
Q  43 tgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggttcgattatcgatnnnnnnnnnnnnaatcaatttgagttagtttttaaa 142  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||            ||||||||||||||||||||||||    
T  48505915 tgagctgaacttgagctacatatagttcgactcgttaggtacatgagatggctcgattattgattatatatata--aatcaatttgagttagtttttaaa 48506012  T
Q  143 attttttaattcaaatgtggcaaatgtcgctgaatacaattttgtcttgaagggaagagcagttgaagtttaaaagtaaaagaatattatgaattttgtt 242  Q
    |    |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  48506013 aaaaattaattcaaatgtggcaaatgtggctgaatacaattttgtcttgaagggaagaacagttggagtttaaaagtaaaagaatattatgaattttgtt 48506112  T
Q  243 cacaactaattgaattttgttggatttttt 272  Q
    ||||||||||||||||||||||||||||||    
T  48506113 cacaactaattgaattttgttggatttttt 48506142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 43 - 279
Target Start/End: Complemental strand, 43052890 - 43052665
Alignment:
Q  43 tgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggttcgattatcgatnnnnnnnnnnnnaatcaatttgagttagtttttaaa 142  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||            ||||||||||||||||||||||||    
T  43052890 tgagctgaacttgagctacatatagttcgactcgttagattcatgagatgactcgattatcgattatatatata--aatcaatttgagttagtttttaaa 43052793  T
Q  143 attttttaattcaaatgtggcaaatgtcgctgaatacaattttgtcttgaagggaagagcagttgaagtttaaaagtaaaagaatattatgaattttgtt 242  Q
     ||||||||||||||||||||         ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  43052792 tttttttaattcaaatgtggc---------tgaatacaattttgtcttgaagggaagagcagttggagtttaaaagtaaaagaatattatgaattttgtt 43052702  T
Q  243 cacaactaattgaattttgttggattttttgtctctg 279  Q
    |||||||||||||||||||||||||||||||||||||    
T  43052701 cacaactaattgaattttgttggattttttgtctctg 43052665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 43 - 272
Target Start/End: Original strand, 3930843 - 3931070
Alignment:
Q  43 tgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggttcgattatcgatnnnnnnnnnnnnaatcaatttgagttagtttttaaa 142  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||| |||            ||||||||||||||||||||||||    
T  3930843 tgagctgaacttgagctacatatagttcaactcgttaggtacatgagatggctcgattattgattatatatata--aatcaatttgagttagtttttaaa 3930940  T
Q  143 attttttaattcaaatgtggcaaatgtcgctgaatacaattttgtcttgaagggaagagcagttgaagtttaaaagtaaaagaatattatgaattttgtt 242  Q
    |    |||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||||||||||||    
T  3930941 aaaaattaattcaaatgtggcaaatgtggctgaatacaattttgtcttgaagggaagactagttggagtttaaaagtaaaagaatattatgaattttgtt 3931040  T
Q  243 cacaactaattgaattttgttggatttttt 272  Q
    ||||||||||||||||||||||||||||||    
T  3931041 cacaactaattgaattttgttggatttttt 3931070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 43 - 272
Target Start/End: Original strand, 5795063 - 5795281
Alignment:
Q  43 tgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggttcgattatcgatnnnnnnnnnnnnaatcaatttgagttagtttttaaa 142  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||            ||||||||||||||||||||||||    
T  5795063 tgagctgaacttgagctacatatagttcaactcgttaggttcatgagatggctcgattatcgattatatatata--aatcaatttgagttagtttttaaa 5795160  T
Q  143 attttttaattcaaatgtggcaaatgtcgctgaatacaattttgtcttgaagggaagagcagttgaagtttaaaagtaaaagaatattatgaattttgtt 242  Q
    |   |||||||||||||||||         ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||    
T  5795161 aaaatttaattcaaatgtggc---------tgaatacaattttgtcttgaagggaagagcagttggagtttaaaagtaaaagaatattatgaattttatt 5795251  T
Q  243 cacaactaattgaattttgttggatttttt 272  Q
    ||||||||||||||||||||||||||||||    
T  5795252 cacaactaattgaattttgttggatttttt 5795281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 43 - 242
Target Start/End: Complemental strand, 37334296 - 37334099
Alignment:
Q  43 tgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggttcgattatcgatnnnnnnnnnnnnaatcaatttgagttagtttttaaa 142  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||            ||||||||||||||||||||||||    
T  37334296 tgagctgaacttgagctacatatagttcgactcattaggttcatgagatggctcgattgtcgattatatatata--aatcaatttgagttagtttttaaa 37334199  T
Q  143 attttttaattcaaatgtggcaaatgtcgctgaatacaattttgtcttgaagggaagagcagttgaagtttaaaagtaaaagaatattatgaattttgtt 242  Q
    |    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  37334198 aaaaattaattcaaatgtggcaaatgtcgctgaatacaattttgtcttgaagggaagagcagttggagtttataagtaaaagaatattatgaattttgtt 37334099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 43 - 272
Target Start/End: Complemental strand, 42072101 - 42071883
Alignment:
Q  43 tgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggttcgattatcgatnnnnnnnnnnnnaatcaatttgagttagtttttaaa 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| |||            ||||||||||||||||||||||||    
T  42072101 tgagctgaacttgagctacatatagttcgactcgttaggttcatgagatgactcgattattgattatatatata--aatcaatttgagttagtttttaaa 42072004  T
Q  143 attttttaattcaaatgtggcaaatgtcgctgaatacaattttgtcttgaagggaagagcagttgaagtttaaaagtaaaagaatattatgaattttgtt 242  Q
    |   |||||||||||||||||         ||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||    
T  42072003 aaaatttaattcaaatgtggc---------tgaatacaattttgtcttgaaaggaagaacagttggagtttaaaagtaaaagaatattatgaattttgtt 42071913  T
Q  243 cacaactaattgaattttgttggatttttt 272  Q
    ||||||||||||||||||||||||||||||    
T  42071912 cacaactaattgaattttgttggatttttt 42071883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 44 - 230
Target Start/End: Complemental strand, 26216289 - 26216106
Alignment:
Q  44 gagctgaacttgagctacatatagttcgactcgttaggttcatgagatggttcgattatcgatnnnnnnnnnnnnaatcaatttgagttagtttttaaaa 143  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||            |||||||||||||||||||||||||    
T  26216289 gagctgaacttgagctacatatagttcgactcgttaggttcatgagatggctcgattatcgattatatata----aatcaatttgagttagtttttaaaa 26216194  T
Q  144 tttt-ttaattcaaatgtggcaaatgtcgctgaatacaattttgtcttgaagggaagagcagttgaagtttaaaagtaaaagaatatt 230  Q
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  26216193 aaaaattaattcaaatgtggcaaatgtcgctgaatacaattttgtcttgaagggaagagcagttggagtttaaaagtaaaagaatatt 26216106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 43 - 279
Target Start/End: Complemental strand, 36927017 - 36926782
Alignment:
Q  43 tgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggttcgattatcgatnnnnnnnnnnnnaatcaatttgagttagttttt-aa 141  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||||| | | |||||| |||            ||||||||||||||||||||| ||    
T  36927017 tgagttgaacttgagctacatatagttcgactcgttaggctcatgagattgcttgattattgattatatatata--aatcaatttgagttagttttttaa 36926920  T
Q  142 aattttttaattcaaatgtggcaaatgtcgctgaatacaattttgtcttgaagggaagagcagttgaagtttaaaagtaaaagaatattatgaattttgt 241  Q
    ||    |||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  36926919 aaaaaattaattcaaatgtgacaaatgtggttgaatacaattttgtcttgaagggaagagcagttggagtttaaaagtaaaag-atattatgaattttgt 36926821  T
Q  242 tcacaactaattgaattttgttgg-attttttgtctctg 279  Q
    ||||| ||||| |||||||||||| ||||||||||||||    
T  36926820 tcacagctaatagaattttgttggaattttttgtctctg 36926782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 160 - 272
Target Start/End: Complemental strand, 45175092 - 45174980
Alignment:
Q  160 tggcaaatgtcgctgaatacaattttgtcttgaagggaagagcagttgaagtttaaaagtaaaagaatattatgaattttgttcacaactaattgaattt 259  Q
    ||||| |||| |||||||||||||||||||| ||||| |||||| ||| |||||| ||||| |||||||||||||||||||||| || ||| ||||||||    
T  45175092 tggcagatgtggctgaatacaattttgtcttaaaggggagagcaattggagtttagaagtagaagaatattatgaattttgttctcagctacttgaattt 45174993  T
Q  260 tgttggatttttt 272  Q
    |||||||||||||    
T  45174992 tgttggatttttt 45174980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 158 - 276
Target Start/End: Complemental strand, 7444294 - 7444176
Alignment:
Q  158 tgtggcaaatgtcgctgaatacaattttgtcttgaagggaagagcagttgaagtttaaaagtaaaagaatattatgaattttgttcacaactaattgaat 257  Q
    ||||||||| || |||||||||||||||||||| ||||| |||||| ||| |||||  ||||| |||||||||||||||| ||||| |  ||||||||||    
T  7444294 tgtggcaaaagtggctgaatacaattttgtctttaaggggagagcaattggagtttggaagtagaagaatattatgaattatgttctcggctaattgaat 7444195  T
Q  258 tttgttggattttttgtct 276  Q
    |||||||||||||||||||    
T  7444194 tttgttggattttttgtct 7444176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 213 - 279
Target Start/End: Original strand, 28950018 - 28950084
Alignment:
Q  213 taaaagtaaaagaatattatgaattttgttcacaactaattgaattttgttggattttttgtctctg 279  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  28950018 taaaagtaaaagaatattatgaattttgttcatagctaattgaattttgttggattttttgtctctg 28950084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 43 - 106
Target Start/End: Original strand, 5776257 - 5776320
Alignment:
Q  43 tgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggttcgattatcgat 106  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||    
T  5776257 tgagctgaacttgagctacatatagttcgactcgttcggttcatgagatgactcgattatcgat 5776320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 43 - 106
Target Start/End: Original strand, 28949885 - 28949948
Alignment:
Q  43 tgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggttcgattatcgat 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||    
T  28949885 tgagctgaacttgagctacatatagttcgactcgttaggttcatgaaatgactcgattatcgat 28949948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 43 - 104
Target Start/End: Original strand, 665974 - 666035
Alignment:
Q  43 tgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggttcgattatcg 104  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  665974 tgagctgaatttgagctacatatagctcgactcgttaggttcatgagatggctcgattatcg 666035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 42072171 - 42072122
Alignment:
Q  2 taatccgttgaacttgattcatgaacctaacgagctggacttgagctgaa 51  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42072171 taatccgttgaacttgattcatgaacctaacgagctggacttgagctgaa 42072122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 5776186 - 5776236
Alignment:
Q  1 ttaatccgttgaacttgattcatgaacctaacgagctggacttgagctgaa 51  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  5776186 ttaatccgttgaacttggttcatgaacctaacgagctggacttgagctgaa 5776236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 37334367 - 37334317
Alignment:
Q  1 ttaatccgttgaacttgattcatgaacctaacgagctggacttgagctgaa 51  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  37334367 ttaatccgttgaacttggttcatgaacctaacgagctggacttgagctgaa 37334317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 5794993 - 5795042
Alignment:
Q  2 taatccgttgaacttgattcatgaacctaacgagctggacttgagctgaa 51  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  5794993 taatccgttgaacttggttcatgaacctaacgagctggacttgagctgaa 5795042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 43 - 102
Target Start/End: Complemental strand, 45176263 - 45176204
Alignment:
Q  43 tgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggttcgattat 102  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||||||  ||||||||    
T  45176263 tgagttgaacttgagctacatataattcgactcgttaggttcatgagatgactcgattat 45176204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 26216361 - 26216311
Alignment:
Q  1 ttaatccgttgaacttgattcatgaacctaacgagctggacttgagctgaa 51  Q
    ||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  26216361 ttaatccgttgaacttggtttatgaacctaacgagctggacttgagctgaa 26216311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 3930773 - 3930822
Alignment:
Q  2 taatccgttgaacttgattcatgaacctaacgagctggacttgagctgaa 51  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||||    
T  3930773 taatccgttgaacttggtccatgaacctaacgagctggacttgagctgaa 3930822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 48505845 - 48505894
Alignment:
Q  2 taatccgttgaacttgattcatgaacctaacgagctggacttgagctgaa 51  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  48505845 taatccgttgaacttggttcatgaacctaatgagctggacttgagctgaa 48505894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 665903 - 665953
Alignment:
Q  1 ttaatccgttgaacttgattcatgaacctaacgagctggacttgagctgaa 51  Q
    |||||||||| || ||| |||||||||||||||||||||||||||||||||    
T  665903 ttaatccgttaaatttggttcatgaacctaacgagctggacttgagctgaa 665953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 48
Target Start/End: Original strand, 28949815 - 28949861
Alignment:
Q  2 taatccgttgaacttgattcatgaacctaacgagctggacttgagct 48  Q
    |||||||||||||||| |||||||||||||||||||||| |||||||    
T  28949815 taatccgttgaacttggttcatgaacctaacgagctggaattgagct 28949861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 48
Target Start/End: Complemental strand, 36927087 - 36927041
Alignment:
Q  2 taatccgttgaacttgattcatgaacctaacgagctggacttgagct 48  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||||    
T  36927087 taatccgttgaacttggttcatgaacctaacgagttggacttgagct 36927041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 43052961 - 43052915
Alignment:
Q  1 ttaatccgttgaacttgattcatgaacctaacgagctggacttgagc 47  Q
    ||||||||||||||||| ||||||||||||| |||||||||||||||    
T  43052961 ttaatccgttgaacttggttcatgaacctaatgagctggacttgagc 43052915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 102
Target Start/End: Complemental strand, 20401014 - 20400955
Alignment:
Q  43 tgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggttcgattat 102  Q
    ||||||||||||||| |||||||||||||||||||| |||| ||||| ||| || |||||    
T  20401014 tgagctgaacttgagttacatatagttcgactcgtttggttaatgagttggctcaattat 20400955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 45176334 - 45176284
Alignment:
Q  1 ttaatccgttgaacttgattcatgaacctaacgagctggacttgagctgaa 51  Q
    ||||||||||||||||| |||||||||| ||||||||| |||| |||||||    
T  45176334 ttaatccgttgaacttggttcatgaaccaaacgagctgaactttagctgaa 45176284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 102
Target Start/End: Complemental strand, 3942195 - 3942135
Alignment:
Q  42 ttgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggttcgattat 102  Q
    ||||||||||||||||||| || ||||||| |||||| |||||| ||||||  ||||||||    
T  3942195 ttgagctgaacttgagctatatgtagttcggctcgtttggttcacgagatgactcgattat 3942135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 15434314 - 15434282
Alignment:
Q  19 ttcatgaacctaacgagctggacttgagctgaa 51  Q
    |||||||||||||||||||||||||||||||||    
T  15434314 ttcatgaacctaacgagctggacttgagctgaa 15434282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 33935591 - 33935547
Alignment:
Q  7 cgttgaacttgattcatgaacctaacgagctggacttgagctgaa 51  Q
    ||||||||||| |||||||||| ||||||||| ||||||||||||    
T  33935591 cgttgaacttggttcatgaaccaaacgagctgaacttgagctgaa 33935547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 44421963 - 44422007
Alignment:
Q  7 cgttgaacttgattcatgaacctaacgagctggacttgagctgaa 51  Q
    ||||||||||| |||||||||| ||||||||| ||||||||||||    
T  44421963 cgttgaacttggttcatgaaccaaacgagctgaacttgagctgaa 44422007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 99
Target Start/End: Original strand, 44422029 - 44422085
Alignment:
Q  43 tgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggttcgat 99  Q
    |||||||||||||||||  ||||||||||||||| | |||||||||| ||| |||||    
T  44422029 tgagctgaacttgagctttatatagttcgactcggttggttcatgagttggctcgat 44422085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 89
Target Start/End: Original strand, 222353 - 222399
Alignment:
Q  43 tgagctgaacttgagctacatatagttcgactcgttaggttcatgag 89  Q
    |||||||||||||||||  ||||||||||||||| | ||||||||||    
T  222353 tgagctgaacttgagctttatatagttcgactcggttggttcatgag 222399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 88
Target Start/End: Complemental strand, 30919440 - 30919395
Alignment:
Q  43 tgagctgaacttgagctacatatagttcgactcgttaggttcatga 88  Q
    |||| |||||||||||| | ||| ||||||||||||||||||||||    
T  30919440 tgagttgaacttgagcttcgtatggttcgactcgttaggttcatga 30919395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 157; Significance: 2e-83; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 43 - 272
Target Start/End: Complemental strand, 10346734 - 10346507
Alignment:
Q  43 tgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggttcgattatcgatnnnnnnnnnnnnaatcaatttgagttagtttttaaa 142  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||||||||  |||||||| |||            ||||||||||||||| ||||||||    
T  10346734 tgagctgaacttgagttacatatagttcgactcgttaagttcatgagatgactcgattattgattatatatata--aatcaatttgagttattttttaaa 10346637  T
Q  143 attttttaattcaaatgtggcaaatgtcgctgaatacaattttgtcttgaagggaagagcagttgaagtttaaaagtaaaagaatattatgaattttgtt 242  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  10346636 attttttaattcaaatgtggcaaatgtggctgaatacaattttgtcttgaagggaagagcagttggagtttaaaagtaaaagaatattatgaattttgtt 10346537  T
Q  243 cacaactaattgaattttgttggatttttt 272  Q
    ||||||||||||||||||||||||||||||    
T  10346536 cacaactaattgaattttgttggatttttt 10346507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 43 - 272
Target Start/End: Complemental strand, 8200655 - 8200428
Alignment:
Q  43 tgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggttcgattatcgatnnnnnnnnnnnnaatcaatttgagttagtttttaaa 142  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||            ||||||||||||||||||| ||||    
T  8200655 tgagttgaacttgagctacatatagttcgactcgttaggttcatgagatggctcgattatcgattatatatata--aatcaatttgagttagtttataaa 8200558  T
Q  143 attttttaattcaaatgtggcaaatgtcgctgaatacaattttgtcttgaagggaagagcagttgaagtttaaaagtaaaagaatattatgaattttgtt 242  Q
    |    |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  8200557 aaaaattaattcaaatgtggcaaatgtggttgaatacaattttgtcttgaagggaagagcagttggagtttaaaagtaaaagaatattatgaattttgtt 8200458  T
Q  243 cacaactaattgaattttgttggatttttt 272  Q
    |||| ||||||||| |||||||||||||||    
T  8200457 cacagctaattgaactttgttggatttttt 8200428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 164 - 274
Target Start/End: Complemental strand, 7957536 - 7957426
Alignment:
Q  164 aaatgtcgctgaatacaattttgtcttgaagggaagagcagttgaagtttaaaagtaaaagaatattatgaattttgttcacaactaattgaattttgtt 263  Q
    |||||| |||||||||||||| ||||| ||| | |||||| ||| |||||  ||||| |||||||||||| ||| ||||| ||||||||||| |||||||    
T  7957536 aaatgtagctgaatacaatttagtcttaaagaggagagcaattggagtttggaagtagaagaatattatgcattctgttctcaactaattgagttttgtt 7957437  T
Q  264 ggattttttgt 274  Q
    |||||||||||    
T  7957436 ggattttttgt 7957426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 10346804 - 10346755
Alignment:
Q  2 taatccgttgaacttgattcatgaacctaacgagctggacttgagctgaa 51  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  10346804 taatccgttgaacttggttcatgaacctaacgagctggacttgagctgaa 10346755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 8200715 - 8200678
Alignment:
Q  1 ttaatccgttgaacttgattcatgaacctaacgagctg 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  8200715 ttaatccgttgaacttgattcatgaacctaacgagctg 8200678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 102
Target Start/End: Original strand, 9950886 - 9950946
Alignment:
Q  42 ttgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggttcgattat 102  Q
    ||||||||||||||||||| || |||||| ||||||| |||||| ||||||  ||||||||    
T  9950886 ttgagctgaacttgagctatatgtagttcaactcgtttggttcacgagatgactcgattat 9950946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 102
Target Start/End: Original strand, 10961922 - 10961982
Alignment:
Q  42 ttgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggttcgattat 102  Q
    ||||||||||||||| ||| || |||||||||||||| |||||| ||||||  ||||||||    
T  10961922 ttgagctgaacttgaactatatgtagttcgactcgtttggttcacgagatgactcgattat 10961982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 43 - 106
Target Start/End: Original strand, 4441428 - 4441491
Alignment:
Q  43 tgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggttcgattatcgat 106  Q
    |||||||||||||| ||  ||||||||||| ||| | |||||||||| ||||||||| ||||||    
T  4441428 tgagctgaacttgaactgtatatagttcgattcggttggttcatgagctggttcgataatcgat 4441491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 85
Target Start/End: Original strand, 5640378 - 5640421
Alignment:
Q  42 ttgagctgaacttgagctacatatagttcgactcgttaggttca 85  Q
    ||||||||||||||| ||| ||||||||||||||||| ||||||    
T  5640378 ttgagctgaacttgaactatatatagttcgactcgtttggttca 5640421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 88
Target Start/End: Original strand, 3081845 - 3081890
Alignment:
Q  43 tgagctgaacttgagctacatatagttcgactcgttaggttcatga 88  Q
    |||||||||||||| |||  |||||||||||||||| |||||||||    
T  3081845 tgagctgaacttgaactaagtatagttcgactcgtttggttcatga 3081890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 88
Target Start/End: Complemental strand, 7437317 - 7437272
Alignment:
Q  43 tgagctgaacttgagctacatatagttcgactcgttaggttcatga 88  Q
    |||||||||||||| |||  |||||||||||||||| |||||||||    
T  7437317 tgagctgaacttgaactaagtatagttcgactcgtttggttcatga 7437272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 102
Target Start/End: Original strand, 27985016 - 27985076
Alignment:
Q  42 ttgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggttcgattat 102  Q
    ||||||||||||||| ||| || ||||||||||||||  ||||| ||||||  ||||||||    
T  27985016 ttgagctgaacttgaactagatgtagttcgactcgtttagttcacgagatgactcgattat 27985076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 145; Significance: 2e-76; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 43 - 272
Target Start/End: Complemental strand, 41959156 - 41958929
Alignment:
Q  43 tgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggttcgattatcgatnnnnnnnnnnnnaatcaatttgagttagtttttaaa 142  Q
    |||||||||| | |||||||||||||||||||||||||||| ||||||||| ||||||||||||            ||||||||||||||||||||||||    
T  41959156 tgagctgaacataagctacatatagttcgactcgttaggttaatgagatggctcgattatcgattatatatata--aatcaatttgagttagtttttaaa 41959059  T
Q  143 attttttaattcaaatgtggcaaatgtcgctgaatacaattttgtcttgaagggaagagcagttgaagtttaaaagtaaaagaatattatgaattttgtt 242  Q
    |   ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  41959058 aaaatttaattcaaatgtggcaaatgtggctgaatacaattttgtcttgaagggaagagcagttggagtttaaaattaaaagaatattatgaattttgtt 41958959  T
Q  243 cacaactaattgaattttgttggatttttt 272  Q
    |||| |||||||||||||||||||||||||    
T  41958958 cacagctaattgaattttgttggatttttt 41958929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 43 - 272
Target Start/End: Complemental strand, 36538669 - 36538442
Alignment:
Q  43 tgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggttcgattatcgatnnnnnnnnnnnnaatcaatttgagttagtttttaaa 142  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||  |||||||| |||            ||||||||||||||||||||||||    
T  36538669 tgagctaaacttgagctacatatagttcgactcgttaggttcatgagatgactcgattattgattatatatata--aatcaatttgagttagtttttaaa 36538572  T
Q  143 attttttaattcaaatgtggcaaatgtcgctgaatacaattttgtcttgaagggaagagcagttgaagtttaaaagtaaaagaatattatgaattttgtt 242  Q
    |    |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  36538571 aaaaattaattcaaatgtgacaaatgtggctgaatacaattttgtcttgaagggaagagcagttggagtttaaaagtaaaagaatattatgaattttgtt 36538472  T
Q  243 cacaactaattgaattttgttggatttttt 272  Q
    ||||| ||||||||||||||||||||||||    
T  36538471 cacaattaattgaattttgttggatttttt 36538442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 43 - 272
Target Start/End: Complemental strand, 34064718 - 34064500
Alignment:
Q  43 tgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggttcgattatcgatnnnnnnnnnnnnaatcaatttgagttagtttttaaa 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||    
T  34064718 tgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggttcgattatcgattatatatata--aatcaatttgagttagtttttaaa 34064621  T
Q  143 attttttaattcaaatgtggcaaatgtcgctgaatacaattttgtcttgaagggaagagcagttgaagtttaaaagtaaaagaatattatgaattttgtt 242  Q
    |    ||||||||||||||||         ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  34064620 aaaaattaattcaaatgtggc---------tgaatacaattttgtcttgaagggaagagcagttggagtttaaaagtaaaagaatattatgaattttgtt 34064530  T
Q  243 cacaactaattgaattttgttggatttttt 272  Q
    ||||||||||||||||||||||||||||||    
T  34064529 cacaactaattgaattttgttggatttttt 34064500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 163 - 279
Target Start/End: Complemental strand, 26436270 - 26436154
Alignment:
Q  163 caaatgtcgctgaatacaattttgtcttgaagggaagagcagttgaagtttaaaagtaaaagaatattatgaattttgttcacaactaattgaattttgt 262  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  26436270 caaatgtggctgaatacaattttgtcttgaagggaagagcagttggagtataaaagtaaaagaatattatgaattttgttcacagctaattgaattttgt 26436171  T
Q  263 tggattttttgtctctg 279  Q
    |||||||||||||||||    
T  26436170 tggattttttgtctctg 26436154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 43 - 242
Target Start/End: Complemental strand, 33831440 - 33831252
Alignment:
Q  43 tgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggttcgattatcgatnnnnnnnnnnnnaatcaatttgagttagtttttaaa 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||            ||||||||||||||||||||||||    
T  33831440 tgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggctcgattatcgattatatatata--aatcaatttgagttagtttttaaa 33831343  T
Q  143 attttttaattcaaatgtggcaaatgtcgctgaatacaattttgtcttgaagggaagagcagttgaagtttaaaagtaaaagaatattatgaattttgtt 242  Q
    |   |||||||||||||||||         ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||    
T  33831342 aaaatttaattcaaatgtggc---------tgaatacaattttgtcttgaatggaagagcagttggagtttaaaagtaaaagaatattataaattttgtt 33831252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 158 - 272
Target Start/End: Complemental strand, 27633640 - 27633526
Alignment:
Q  158 tgtggcaaatgtcgctgaatacaattttgtcttgaagggaagagcagttgaagtttaaaagtaaaagaatattatgaattttgttcacaactaattgaat 257  Q
    |||||||||||| |||||||||||||||||||||||||||| | || ||| |||||| |||||||| |||||||||||||||||||||| ||||||||||    
T  27633640 tgtggcaaatgtggctgaatacaattttgtcttgaagggaataacaattggagtttagaagtaaaataatattatgaattttgttcacagctaattgaat 27633541  T
Q  258 tttgttggatttttt 272  Q
    |||||||||||||||    
T  27633540 tttgttggatttttt 27633526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 43 - 106
Target Start/End: Complemental strand, 26436367 - 26436304
Alignment:
Q  43 tgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggttcgattatcgat 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  26436367 tgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggctcgattatcgat 26436304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 43 - 93
Target Start/End: Complemental strand, 33831508 - 33831458
Alignment:
Q  43 tgagctgaacttgagctacatatagttcgactcgttaggttcatgagatgg 93  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33831508 tgagctgaacttgagctacatatagttcgactcgttaggttcatgagatgg 33831458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 41959226 - 41959177
Alignment:
Q  2 taatccgttgaacttgattcatgaacctaacgagctggacttgagctgaa 51  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41959226 taatccgttgaacttgattcatgaacctaacgagctggacttgagctgaa 41959177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 27634684 - 27634635
Alignment:
Q  43 tgagctgaacttgagctacatatagttcgactcgttaggttcatgagatg 92  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  27634684 tgagctgaacttgagctacatatagtttgactcgttaggttcatgagatg 27634635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 33164037 - 33164086
Alignment:
Q  2 taatccgttgaacttgattcatgaacctaacgagctggacttgagctgaa 51  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  33164037 taatccgttgaacttggttcatgaacctaacgagctggacttgagctgaa 33164086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 27634755 - 27634705
Alignment:
Q  1 ttaatccgttgaacttgattcatgaacctaacgagctggacttgagctgaa 51  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  27634755 ttaatccgttgaacttagttcatgaacctaacgagctggacttgagctgaa 27634705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 33831578 - 33831529
Alignment:
Q  2 taatccgttgaacttgattcatgaacctaacgagctggacttgagctgaa 51  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  33831578 taatccgttgaatttggttcatgaacctaacgagctggacttgagctgaa 33831529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 34064788 - 34064739
Alignment:
Q  2 taatccgttgaacttgattcatgaacctaacgagctggacttgagctgaa 51  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||    
T  34064788 taatccgttgaacttagttcatgaacctaacgagctggacttgagctgaa 34064739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 36538739 - 36538690
Alignment:
Q  2 taatccgttgaacttgattcatgaacctaacgagctggacttgagctgaa 51  Q
    |||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  36538739 taatccgttgaacttggttcatgaacctaacgagttggacttgagctgaa 36538690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 216 - 276
Target Start/End: Complemental strand, 20986506 - 20986446
Alignment:
Q  216 aagtaaaagaatattatgaattttgttcacaactaattgaattttgttggattttttgtct 276  Q
    ||||| |||||||||||||||| ||||| |  |||||||||||||||||||||||||||||    
T  20986506 aagtagaagaatattatgaattatgttctcggctaattgaattttgttggattttttgtct 20986446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 26436438 - 26436388
Alignment:
Q  1 ttaatccgttgaacttgattcatgaacctaacgagctggacttgagctgaa 51  Q
    ||||||||||||||||| |||||||||||||||||||| || |||||||||    
T  26436438 ttaatccgttgaacttggttcatgaacctaacgagctgaacgtgagctgaa 26436388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 42 - 102
Target Start/End: Original strand, 34116299 - 34116359
Alignment:
Q  42 ttgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggttcgattat 102  Q
    ||||||||||||||||||| || |||||||||||||| |||||||| ||||  ||||||||    
T  34116299 ttgagctgaacttgagctatatgtagttcgactcgtttggttcatgtgatgactcgattat 34116359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 42 - 102
Target Start/End: Complemental strand, 39690184 - 39690124
Alignment:
Q  42 ttgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggttcgattat 102  Q
    ||||| ||||||||||||| || |||||||||||||| |||||||||||||  ||||||||    
T  39690184 ttgagttgaacttgagctatatgtagttcgactcgtttggttcatgagatgactcgattat 39690124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 91
Target Start/End: Complemental strand, 11027922 - 11027873
Alignment:
Q  42 ttgagctgaacttgagctacatatagttcgactcgttaggttcatgagat 91  Q
    ||||||||||||||||||| || |||||||||||||| |||||| |||||    
T  11027922 ttgagctgaacttgagctatatgtagttcgactcgtttggttcacgagat 11027873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 91
Target Start/End: Original strand, 27902564 - 27902613
Alignment:
Q  42 ttgagctgaacttgagctacatatagttcgactcgttaggttcatgagat 91  Q
    ||||| ||||||||||||| || |||||||||||||| |||||| |||||    
T  27902564 ttgagttgaacttgagctatatgtagttcgactcgtttggttcacgagat 27902613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 88
Target Start/End: Complemental strand, 29806930 - 29806885
Alignment:
Q  43 tgagctgaacttgagctacatatagttcgactcgttaggttcatga 88  Q
    |||| |||||||||||| | ||| ||||||||||||||||||||||    
T  29806930 tgagttgaacttgagcttcgtatggttcgactcgttaggttcatga 29806885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 88
Target Start/End: Complemental strand, 40458934 - 40458889
Alignment:
Q  43 tgagctgaacttgagctacatatagttcgactcgttaggttcatga 88  Q
    |||||||||||||| |||  |||||||||||||||| |||||||||    
T  40458934 tgagctgaacttgaactaagtatagttcgactcgtttggttcatga 40458889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 44740545 - 44740586
Alignment:
Q  7 cgttgaacttgattcatgaacctaacgagctggacttgagct 48  Q
    ||||||||||| |||||||||| ||||||||| |||||||||    
T  44740545 cgttgaacttggttcatgaaccaaacgagctgaacttgagct 44740586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 24844728 - 24844772
Alignment:
Q  7 cgttgaacttgattcatgaacctaacgagctggacttgagctgaa 51  Q
    ||||||||||| |||||||||| || |||||| ||||||||||||    
T  24844728 cgttgaacttggttcatgaaccaaatgagctgaacttgagctgaa 24844772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 138; Significance: 4e-72; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 43 - 272
Target Start/End: Complemental strand, 41609901 - 41609673
Alignment:
Q  43 tgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggttcgattatcgatnnnnnnnnnnnnaatcaatttgagttagttttt-aa 141  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||            ||||||||||||||||||||| ||    
T  41609901 tgagctgaacttgagctacatatagttcgactcgttgggttcatgagatgactcgattatcgattatatatata--aatcaatttgagttagttttttaa 41609804  T
Q  142 aattttttaattcaaatgtggcaaatgtcgctgaatacaattttgtcttgaagggaagagcagttgaagtttaaaagtaaaagaatattatgaattttgt 241  Q
    ||    |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  41609803 aaaaaattaattcaaatgaggcaaatgtggctgaatacaattttgtcttgaagggaagagcagttggagtttaaaagtaaaagaatattatgaattttgt 41609704  T
Q  242 tcacaactaattgaattttgttggatttttt 272  Q
    ||||| |||||||||||||||||||||||||    
T  41609703 tcacagctaattgaattttgttggatttttt 41609673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 43 - 272
Target Start/End: Complemental strand, 32689182 - 32688964
Alignment:
Q  43 tgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggttcgattatcgatnnnnnnnnnnnnaatcaatttgagttagtttttaaa 142  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||  || ||||| |||            ||||||||||||||||||||||||    
T  32689182 tgagctgaacttgagctacatatagttcgactcgttaagttcatgagatgactcaattattgattatatatata--aatcaatttgagttagtttttaaa 32689085  T
Q  143 attttttaattcaaatgtggcaaatgtcgctgaatacaattttgtcttgaagggaagagcagttgaagtttaaaagtaaaagaatattatgaattttgtt 242  Q
    |||||||||||||||||||||         ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  32689084 attttttaattcaaatgtggc---------tgaatacaattttgtcttgaagggaagagcagttggagtttaaaagtaaaagaatattatgaattttgtt 32688994  T
Q  243 cacaactaattgaattttgttggatttttt 272  Q
    |||||||||||||||||||||| |||||||    
T  32688993 cacaactaattgaattttgttgaatttttt 32688964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 43 - 272
Target Start/End: Original strand, 23206434 - 23206662
Alignment:
Q  43 tgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggttcgattatcgatnnnnnnnnnnnnaatcaatttgagttagtttttaaa 142  Q
    |||||||||||| |||||||||||||||||||  ||||||||||||||||  || |||||||||            ||||||||||||||||||||||||    
T  23206434 tgagctgaacttaagctacatatagttcgacttattaggttcatgagatgactcaattatcgattatatatata--aatcaatttgagttagtttttaaa 23206531  T
Q  143 atttt-ttaattcaaatgtggcaaatgtcgctgaatacaattttgtcttgaagggaagagcagttgaagtttaaaagtaaaagaatattatgaattttgt 241  Q
    |     |||||||||||||||||||||||||| ||||||||||||||||||||| || | |||||| |||||||||||||||||||||||||||||||||    
T  23206532 aaaaaattaattcaaatgtggcaaatgtcgcttaatacaattttgtcttgaaggaaaaaacagttggagtttaaaagtaaaagaatattatgaattttgt 23206631  T
Q  242 tcacaactaattgaattttgttggatttttt 272  Q
    ||||| |||||| ||||||||||||||||||    
T  23206632 tcacagctaattaaattttgttggatttttt 23206662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 158 - 276
Target Start/End: Complemental strand, 39134260 - 39134142
Alignment:
Q  158 tgtggcaaatgtcgctgaatacaattttgtcttgaagggaagagcagttgaagtttaaaagtaaaagaatattatgaattttgttcacaactaattgaat 257  Q
    ||||||||||||  ||||||||||||| ||||||||| | |||||| ||| |||||  ||||| |||||||||||||||| ||||  ||  |||||||||    
T  39134260 tgtggcaaatgtgactgaatacaatttcgtcttgaagaggagagcaattggagtttggaagtagaagaatattatgaattatgttatcagttaattgaat 39134161  T
Q  258 tttgttggattttttgtct 276  Q
    |||||||||||||||||||    
T  39134160 tttgttggattttttgtct 39134142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 41609972 - 41609922
Alignment:
Q  1 ttaatccgttgaacttgattcatgaacctaacgagctggacttgagctgaa 51  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  41609972 ttaatccgttgaacttggttcatgaacctaacgagctggacttgagctgaa 41609922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 32689252 - 32689203
Alignment:
Q  2 taatccgttgaacttgattcatgaacctaacgagctggacttgagctgaa 51  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  32689252 taatccgttgaacttggttcatgaacctaacgagctggacttgagctgaa 32689203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 102
Target Start/End: Complemental strand, 45714774 - 45714679
Alignment:
Q  7 cgttgaacttgattcatgaacctaacgagctggacttgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggttcgattat 102  Q
    ||||||||||||||||| || | || |||  | ||||||||||||||||| ||| || |||||||||||||| |||||| ||||||  ||||||||    
T  45714774 cgttgaacttgattcataaatcaaatgagtcgaacttgagctgaacttgaactatatgtagttcgactcgtttggttcacgagatgactcgattat 45714679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 23206364 - 23206414
Alignment:
Q  1 ttaatccgttgaacttgattcatgaacctaacgagctggacttgagctgaa 51  Q
    |||||| |||||||||  |||||||||||||||||||||||||||||||||    
T  23206364 ttaatctgttgaactttgttcatgaacctaacgagctggacttgagctgaa 23206414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 102
Target Start/End: Complemental strand, 44574539 - 44574480
Alignment:
Q  43 tgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggttcgattat 102  Q
    ||||| ||||||||||||||||||||||| |||||| |||||||||| | | ||||||||    
T  44574539 tgagccgaacttgagctacatatagttcggctcgtttggttcatgagttagctcgattat 44574480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 52199513 - 52199463
Alignment:
Q  1 ttaatccgttgaacttgattcatgaacctaacgagctggacttgagctgaa 51  Q
    ||||| ||||||||||| |||||||||| ||||||||| ||||||||||||    
T  52199513 ttaattcgttgaacttggttcatgaaccaaacgagctgaacttgagctgaa 52199463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 89
Target Start/End: Complemental strand, 33896843 - 33896797
Alignment:
Q  43 tgagctgaacttgagctacatatagttcgactcgttaggttcatgag 89  Q
    ||||||||||||||| || |||||||||||||||||  |||||||||    
T  33896843 tgagctgaacttgagttatatatagttcgactcgtttagttcatgag 33896797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 39942856 - 39942906
Alignment:
Q  1 ttaatccgttgaacttgattcatgaacctaacgagctggacttgagctgaa 51  Q
    |||||| |||||||||| ||||||||| ||| |||||| ||||||||||||    
T  39942856 ttaatctgttgaacttggttcatgaacttaatgagctgaacttgagctgaa 39942906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 99
Target Start/End: Complemental strand, 28242592 - 28242540
Alignment:
Q  47 ctgaacttgagctacatatagttcgactcgttaggttcatgagatggttcgat 99  Q
    |||||||||||||  ||||||||||||||| | |||||||||| ||| |||||    
T  28242592 ctgaacttgagctgtatatagttcgactcggttggttcatgagctggctcgat 28242540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 99
Target Start/End: Complemental strand, 52199402 - 52199346
Alignment:
Q  43 tgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggttcgat 99  Q
    |||||||||||||||||  ||||||||||||||  | |||||||||| ||| |||||    
T  52199402 tgagctgaacttgagctttatatagttcgactcagttggttcatgagttggctcgat 52199346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 102
Target Start/End: Original strand, 54393569 - 54393629
Alignment:
Q  42 ttgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggttcgattat 102  Q
    |||||| |||||||| ||| || |||||||||||||| |||||| ||||||  ||||||||    
T  54393569 ttgagccgaacttgaactatatgtagttcgactcgtttggttcacgagatgactcgattat 54393629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 43 - 272
Target Start/End: Complemental strand, 18880205 - 18879980
Alignment:
Q  43 tgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggttcgattatcgatnnnnnnnnnnnnaatcaatttgagttagtttttaaa 142  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||| |||            ||||||||||||| ||||||||||    
T  18880205 tgagctgaacttgagctacatatagttcaactcgttaggtacatgagatggctcgattattgattatatatata--aatcaatttgagt-agtttttaaa 18880109  T
Q  143 attttttaattcaaatgtggcaaatgtcgctgaatacaattttgtcttgaagggaagagcagttgaagtttaaaagtaaaagaatattatgaattttgtt 242  Q
    |  ||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  18880108 aaattt-aattcaaatgtggcaaatgtggttgaatacaattttgtcttgaagggaagagcagttggagtttaaaagtaaaagaatattatgaattttgtt 18880010  T
Q  243 cacaactaattgaattttgttggatttttt 272  Q
    ||||||||||||||||||||||||||||||    
T  18880009 cacaactaattgaattttgttggatttttt 18879980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 53 - 272
Target Start/End: Complemental strand, 22922053 - 22921836
Alignment:
Q  53 ttgagctacatatagttcgactcgttaggttcatgagatggttcgattatcgatnnnnnnnnnnnnaatcaatttgagttagtttttaaaattttttaat 152  Q
    ||||||||||||||||| ||||||||||||||||||||||| |||||||| |||            |||||||||||||||||||||||||    |||||    
T  22922053 ttgagctacatatagttagactcgttaggttcatgagatggctcgattattgattatatatata--aatcaatttgagttagtttttaaaaaaaattaat 22921956  T
Q  153 tcaaatgtggcaaatgtcgctgaatacaattttgtcttgaagggaagagcagttgaagtttaaaagtaaaagaatattatgaattttgttcacaactaat 252  Q
    ||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  22921955 tcaaatgtgacaaatgtggctgaatacgattttgtcttgaagggaagagcagttggagtttaaaagtaaaagaatattatgaattttgttcacaactaat 22921856  T
Q  253 tgaattttgttggatttttt 272  Q
    ||||||||||||||||||||    
T  22921855 tgaattttgttggatttttt 22921836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 43 - 272
Target Start/End: Complemental strand, 27906111 - 27905883
Alignment:
Q  43 tgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggttcgattatcgatnnnnnnnnnnnnaatcaatttgagttagtttttaaa 142  Q
    |||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||| |||            ||||||||||||||||||||||||    
T  27906111 tgagctgaacttgagctacatatagttcgacttgttaggctcatgagatggctcgattattgattatatatata--aatcaatttgagttagtttttaaa 27906014  T
Q  143 attttt-taattcaaatgtggcaaatgtcgctgaatacaattttgtcttgaagggaagagcagttgaagtttaaaagtaaaagaatattatgaattttgt 241  Q
    |      ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  27906013 aaaaaaataattcaaatgtggcaaatgtggctgaatacaattttgtcttgaagagaagagcagttggagtttaaaagtaaaagaatattatgaattttgt 27905914  T
Q  242 tcacaactaattgaattttgttggatttttt 272  Q
    ||||| |||||||||||||||||||||||||    
T  27905913 tcacagctaattgaattttgttggatttttt 27905883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 119 - 272
Target Start/End: Complemental strand, 29327973 - 29327819
Alignment:
Q  119 aatcaatttgagttagtttttaaaattt-tttaattcaaatgtggcaaatgtcgctgaatacaattttgtcttgaagggaagagcagttgaagtttaaaa 217  Q
    |||||||||||||||||||||||||    |||||||||||||||||||||||   ||||||||||||||||||||||||||||||| ||| |||||||||    
T  29327973 aatcaatttgagttagtttttaaaaaaaatttaattcaaatgtggcaaatgtgattgaatacaattttgtcttgaagggaagagcaattggagtttaaaa 29327874  T
Q  218 gtaaaagaatattatgaattttgttcacaactaattgaattttgttggatttttt 272  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  29327873 gtaaaagaatattatgaattttgttcacagctaattgaattttgttggatttttt 29327819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 164 - 274
Target Start/End: Original strand, 3805058 - 3805168
Alignment:
Q  164 aaatgtcgctgaatacaattttgtcttgaagggaagagcagttgaagtttaaaagtaaaagaatattatgaattttgttcacaactaattgaattttgtt 263  Q
    |||||| |||||||||||||||||||| ||||| |||||| ||| |||||  ||||| || ||||||||| ||| ||||  | ||||||||| |||||||    
T  3805058 aaatgtggctgaatacaattttgtctttaaggggagagcaattggagtttggaagtagaaaaatattatgcattctgttatcgactaattgagttttgtt 3805157  T
Q  264 ggattttttgt 274  Q
    |||||||||||    
T  3805158 ggattttttgt 3805168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 27906181 - 27906132
Alignment:
Q  2 taatccgttgaacttgattcatgaacctaacgagctggacttgagctgaa 51  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  27906181 taatccgttgaacttggttcatgaacctaacgagctggacttgagctgaa 27906132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 29328127 - 29328078
Alignment:
Q  1 ttaatccgttgaacttgattcatgaacctaacgagctggacttgagctgaa 51  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  29328127 ttaatccgttgaacttgattcatgaacctaac-agctggacttgagctgaa 29328078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 18880275 - 18880226
Alignment:
Q  2 taatccgttgaacttgattcatgaacctaacgagctggacttgagctgaa 51  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  18880275 taatccgttgaacttggttcatgaacctaacgagctggacttaagctgaa 18880226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 59 - 105
Target Start/End: Complemental strand, 29328037 - 29327991
Alignment:
Q  59 tacatatagttcgactcgttaggttcatgagatggttcgattatcga 105  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||    
T  29328037 tacatatagttcgactcgttaggttcatgagatgactcgattatcga 29327991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 42 - 102
Target Start/End: Original strand, 20190710 - 20190770
Alignment:
Q  42 ttgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggttcgattat 102  Q
    ||||||||||||||||||| || |||||||| ||||| |||||||||||||  ||||||||    
T  20190710 ttgagctgaacttgagctatatgtagttcgaatcgtttggttcatgagatgactcgattat 20190770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 92
Target Start/End: Complemental strand, 20188987 - 20188937
Alignment:
Q  42 ttgagctgaacttgagctacatatagttcgactcgttaggttcatgagatg 92  Q
    ||||||||||||||||||| || |||||||||||||| |||||| ||||||    
T  20188987 ttgagctgaacttgagctatatgtagttcgactcgtttggttcacgagatg 20188937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 43 - 106
Target Start/End: Original strand, 19282241 - 19282304
Alignment:
Q  43 tgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggttcgattatcgat 106  Q
    |||||||||||||| ||  ||||||||||||||| | | |||||||| ||||||||| ||||||    
T  19282241 tgagctgaacttgaactgtatatagttcgactcggttgattcatgagctggttcgataatcgat 19282304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 43 - 102
Target Start/End: Complemental strand, 31620881 - 31620822
Alignment:
Q  43 tgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggttcgattat 102  Q
    ||||||||||||||| |||||||| ||||||||||| |||| ||||  ||| ||||||||    
T  31620881 tgagctgaacttgagttacatataattcgactcgtttggttaatgacttggctcgattat 31620822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 88
Target Start/End: Complemental strand, 10493998 - 10493953
Alignment:
Q  43 tgagctgaacttgagctacatatagttcgactcgttaggttcatga 88  Q
    |||||||||||||| |||  |||||||||||||||| |||||||||    
T  10493998 tgagctgaacttgaactaagtatagttcgactcgtttggttcatga 10493953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 1840749 - 1840793
Alignment:
Q  7 cgttgaacttgattcatgaacctaacgagctggacttgagctgaa 51  Q
    ||||||||||| |||||||||| || |||||| ||||||||||||    
T  1840749 cgttgaacttggttcatgaaccaaatgagctgaacttgagctgaa 1840793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 19282176 - 19282220
Alignment:
Q  7 cgttgaacttgattcatgaacctaacgagctggacttgagctgaa 51  Q
    ||||||||||| |||||||||| || |||||| ||||||||||||    
T  19282176 cgttgaacttggttcatgaaccaaatgagctgaacttgagctgaa 19282220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 107; Significance: 1e-53; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 43 - 242
Target Start/End: Complemental strand, 11161585 - 11161397
Alignment:
Q  43 tgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggttcgattatcgatnnnnnnnnnnnnaatcaatttgagttagtttttaaa 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||            ||||||||||||||||||||||||    
T  11161585 tgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggctcgattatggattatatatata--aatcaatttgagttagtttttaaa 11161488  T
Q  143 attttttaattcaaatgtggcaaatgtcgctgaatacaattttgtcttgaagggaagagcagttgaagtttaaaagtaaaagaatattatgaattttgtt 242  Q
     || |||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  11161487 tttgtttaattcaaatgtggc---------tgaatacaattttgtcttgaagggaagagcagttgaagtttaaaagtaaaataatattatgaattttgtt 11161397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 43 - 259
Target Start/End: Complemental strand, 453496 - 453289
Alignment:
Q  43 tgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggttcgattatcgatnnnnnnnnnnnnaatcaatttgagttagtttttaaa 142  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||            ||||||||||||||||||||||||    
T  453496 tgagttgaacttgagctacatatagttcgactcgttaggttcatgagatggctcgattatcgattatatatata--aatcaatttgagttagtttttaaa 453399  T
Q  143 attttttaattcaaatgtggcaaatgtcgctgaatacaattttgtcttgaagggaagag--cagttgaagtttaaaagtaaaagaatattatgaattttg 240  Q
    |    ||||||||||||||||         |||||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||||    
T  453398 aaaaattaattcaaatgtggc---------tgaatacaattttgtcttgaagggaagagagcagttggagtttaaaagtaaaagaatattatgaattttg 453308  T
Q  241 ttcacaactaattgaattt 259  Q
    |||| ||||||||||||||    
T  453307 ttcataactaattgaattt 453289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 11161656 - 11161606
Alignment:
Q  1 ttaatccgttgaacttgattcatgaacctaacgagctggacttgagctgaa 51  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  11161656 ttaatccgttgaacttggttcatgaacctaacgagctggacttgagctgaa 11161606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 453566 - 453517
Alignment:
Q  2 taatccgttgaacttgattcatgaacctaacgagctggacttgagctgaa 51  Q
    |||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  453566 taatccgttgaacttggttcatgaacctaacgagctggacttgagttgaa 453517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 102
Target Start/End: Complemental strand, 34516152 - 34516092
Alignment:
Q  42 ttgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggttcgattat 102  Q
    ||||||||||||||| ||| || |||||||||||||| |||||| ||||||  ||||||||    
T  34516152 ttgagctgaacttgaactatatgtagttcgactcgtttggttcacgagatgactcgattat 34516092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 78
Target Start/End: Original strand, 10749345 - 10749381
Alignment:
Q  42 ttgagctgaacttgagctacatatagttcgactcgtt 78  Q
    ||||||||||||||||||| || ||||||||||||||    
T  10749345 ttgagctgaacttgagctatatgtagttcgactcgtt 10749381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0224 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0224
Description:

Target: scaffold0224; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 102
Target Start/End: Original strand, 7434 - 7494
Alignment:
Q  42 ttgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggttcgattat 102  Q
    ||||||||||||||| | | |||||| |||||||||| |||||||||||||  ||||||||    
T  7434 ttgagctgaacttgaaccatatataggtcgactcgtttggttcatgagatgactcgattat 7494  T

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Target: scaffold0204 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 91
Target Start/End: Original strand, 26747 - 26796
Alignment:
Q  42 ttgagctgaacttgagctacatatagttcgactcgttaggttcatgagat 91  Q
    ||||||||||||| ||||| || |||||||||||||| |||||| |||||    
T  26747 ttgagctgaacttaagctatatgtagttcgactcgtttggttcacgagat 26796  T

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