View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1946_low_108 (Length: 286)
Name: NF1946_low_108
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_low_108 |
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Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 13 - 269
Target Start/End: Original strand, 35387992 - 35388248
Alignment:
| Q |
13 |
attggtgttaagtactatttttatttggtactttaagttgtgtaattgcagatacacccttcacatttgaacatgcatttcttctcacgactaaccatac |
112 |
Q |
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| T |
35387992 |
attggtggtaagtactatttttatttggtactttaagttgtgtaattgctgatacacccttcacatttgaacatgcatttcttctcacgactaaccatac |
35388091 |
T |
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| Q |
113 |
aaaaataattataatttttattttataatgccgatgattaacatacataaccaaaatgtatacatattcggagaaagtgaaaatcaataactcaaaatgt |
212 |
Q |
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| T |
35388092 |
aaaaataattataatttttattttataatgccgatgattaacatacataaccaaaatgtatacatattcggagaaagtgaaaatcaataactcaaaatgt |
35388191 |
T |
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| Q |
213 |
gatgcatgccttcgatctttcattcatgttggaagatttgttcattgtgacctatgt |
269 |
Q |
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| T |
35388192 |
gatgcatgccttcgatctttcattcatgttggaagatttgttcattgtgacctatgt |
35388248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 13 - 99
Target Start/End: Original strand, 35384146 - 35384232
Alignment:
| Q |
13 |
attggtgttaagtactatttttatttggtactttaagttgtgtaattgcagatacacccttcacatttgaacatgcatttcttctca |
99 |
Q |
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| T |
35384146 |
attggtggtaagtactatttttatttggtacgttaaattgtgtaattgcatatacaccctttacattttaacatgcacttcttctca |
35384232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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