View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1946_low_11 (Length: 570)
Name: NF1946_low_11
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 19 - 377
Target Start/End: Complemental strand, 45666614 - 45666256
Alignment:
| Q |
19 |
atatccacggtgcaaatggtaaccaggtaatgttccatccaagcacactgcaagaaacaaaaaa-tatttaatgttagagaggaaaggaggagaaaggtg |
117 |
Q |
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| T |
45666614 |
atatccacggtgcaaatggtaaccaggtaatgttccatccaagcacactgcaagaaacaaaaaaatatttaatgtt-gagaggaaaggaggagaaaggtg |
45666516 |
T |
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| Q |
118 |
ctgtattgtttgtaggtagtactagtactagtatagtacctgctcctttagcagctgcattgtggataagggtgaatcctacgagaagaggatttccatt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||| |
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| T |
45666515 |
ctgtattgtttgtaggtagtactagtactagtatagtacctgctcctttagcagctgcattgtgaacaagggtgagtcctacgagaagaggatttccatt |
45666416 |
T |
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| Q |
218 |
accctcctcaagaaaggatgttgcatgttcatgagcctctaacagaaagagttcttcggtttcattgaagaagtgatgttgttgaccataaaccaggttg |
317 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |
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| T |
45666415 |
accctcctcaagaaaggatgctgcatgttcatgagcctctaacagaaagagttcttcagtttcattgaagaagtgatgttgttgaccataaaccaagttg |
45666316 |
T |
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| Q |
318 |
atgataacaagtcctattgcaatgaaaagccagaaatgtttagccattggcgatgacaat |
377 |
Q |
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| T |
45666315 |
atgataacaagtcctattgcaatgaaaagccagaaaagtttagccattggcgatgacaat |
45666256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 443 - 562
Target Start/End: Complemental strand, 45666240 - 45666117
Alignment:
| Q |
443 |
ctatattaacgtgaacaaaggaaatttaggaggtgattaaggaaagaggtac-----aaagatatataaggcaaagnnnnnnngtggcaccgggcgggct |
537 |
Q |
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||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||| |
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| T |
45666240 |
ctatattaatgtgaacaaaggaaatttaggaggtgattaagg-aagaggtacaaagtaaagatatataaggcaaagaaaaaaagtggcaccgggcgggct |
45666142 |
T |
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| Q |
538 |
tctttcaagttttattagtattatc |
562 |
Q |
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||||||||||||||||| ||||||| |
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| T |
45666141 |
tctttcaagttttattattattatc |
45666117 |
T |
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