View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1946_low_110 (Length: 280)
Name: NF1946_low_110
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_low_110 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 13 - 280
Target Start/End: Original strand, 37351320 - 37351585
Alignment:
| Q |
13 |
aatattagtcttctttggggattctcctatgattgagtaaacaatagatacatttattcggcgaatgtgtttaatgattgataatataatatacttaata |
112 |
Q |
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| T |
37351320 |
aatattagtcttctttggggattctcctatgattgagtaaacaatagatacatttattcggcgaatgtgtttaatgattgataatataatatacttaata |
37351419 |
T |
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| Q |
113 |
ctttactcaagcaagaagaaaattaaaacaaagaatcacgaaagatacttctgcaagctt-cttctatcctaaaaaattgtttaatcnnnnnnngaaaga |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
37351420 |
ctttactcaagcaagaagaaaattaaaacaaagaatcacgaaagatacttctgcaagcttccttctatcctaaaaaattgtttaatc---aaaagaaaga |
37351516 |
T |
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| Q |
212 |
gtctcaaatttaaatattactagtttgttctcctacctcttgctggccagtgattaatgaagaatatat |
280 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37351517 |
gtctcaaatttaaatattactagtttgttctcctacctcttgctggccagtgattaatgaagaatatat |
37351585 |
T |
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