View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1946_low_111 (Length: 275)
Name: NF1946_low_111
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_low_111 |
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Alignment Details
Target: chr6 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 16 - 274
Target Start/End: Complemental strand, 31115021 - 31114763
Alignment:
| Q |
16 |
atgatttcggccttgatcaacgtggataagggtttacataaccctaccactctatatatggactcaattaattgtaggttttcaatactccaattcagga |
115 |
Q |
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| T |
31115021 |
atgatttcggccttgatcaacgtggataagggtttacataaccctaccactctatatatggactcaattaattgtaggttttcaatactccaattcagga |
31114922 |
T |
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| Q |
116 |
cacctagagagaagtttcgtgaaatcttcctcaacttcgaaataaatatcacacaaccgtagggttttgagaaaaggaagttcaacagaacaatgaaaca |
215 |
Q |
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| T |
31114921 |
cacctagagagaagtttcgtgaaatcttcctcaacttcgaaataaatatcacacaaccgtagggttttgagaaaaggaagttcaacagaacaatgaaaca |
31114822 |
T |
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| Q |
216 |
tagctactacatgtatattcatcagtctcaaaaccaaaagtgtattccagtaggaaatg |
274 |
Q |
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| T |
31114821 |
tagctactacatgtatattcatcagtctcaaaaccaaaagtgtattgcagtaggaaatg |
31114763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 85 - 215
Target Start/End: Complemental strand, 31088923 - 31088793
Alignment:
| Q |
85 |
aattgtaggttttcaatactccaattcaggacacctagagagaagtttcgtgaaatcttcctcaacttcgaaataaatatcacacaaccgtagggttttg |
184 |
Q |
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|||||||| ||| |||| ||||||||| ||||||| ||||| ||||||| ||||||| | | |||||||||||||||||| | |||| |||| |||||| |
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| T |
31088923 |
aattgtagttttccaatcctccaattcgggacacccagagataagtttcatgaaatccttcccaacttcgaaataaatattaaacaattgtagagttttg |
31088824 |
T |
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| Q |
185 |
agaaaaggaagttcaacagaacaatgaaaca |
215 |
Q |
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| T |
31088823 |
agcataggaagatctacataacaatgaaaca |
31088793 |
T |
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