View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1946_low_112 (Length: 272)
Name: NF1946_low_112
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_low_112 |
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Alignment Details
Target: chr5 (Bit Score: 166; Significance: 6e-89; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 12 - 253
Target Start/End: Complemental strand, 34297804 - 34297566
Alignment:
| Q |
12 |
atgaaggtgaaacatttgataatgaagacctctttgcaccagtttgagtttgaaggaatcacattcatgctaaacagctgccctaatctagagcatctca |
111 |
Q |
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| T |
34297804 |
atgaaggtgaaacatatgataatgaagacctctttgcaccagtttgagttttagggaatcacattcatgctaaacagctgccccaatcttgagcatctca |
34297705 |
T |
|
| Q |
112 |
caattgaaattattgagaaaagatatatgaatgtaagtattacaaaaatttaattttctttaaatgattttctgtacacatgttatatagatttaannnn |
211 |
Q |
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| T |
34297704 |
caattgaaattgttgagaaaagatatatgaatgtaagtaatac-aaaatttaattttttttaaatgatttgctgt--acatgttatatagatttaatttt |
34297608 |
T |
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| Q |
212 |
nnnacagggtatatattataagaatttgatttgtatacatta |
253 |
Q |
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| T |
34297607 |
tttacagggtatatattataagaatttgatttgtatacatta |
34297566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 12 - 251
Target Start/End: Complemental strand, 34288501 - 34288264
Alignment:
| Q |
12 |
atgaaggtgaaacatttgataatgaagacctctttgcaccagtttgagtttgaaggaatcacattcatgctaaacagctgccctaatctagagcatctca |
111 |
Q |
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| T |
34288501 |
atgaaggtgaaacatttgataatgaagacctttttgcacccgcttgagtttgagggaatcgcattcatgctaaagagctgccctaacctagagcatctca |
34288402 |
T |
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| Q |
112 |
caattgaaattattgagaaaagatatatgaatgtaagtattacaaaaatttaattttctttaaatgattttctgtacacatgttatatagatttaannnn |
211 |
Q |
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| T |
34288401 |
caattgaaattgttgagaaaaaatatatgaatgtaagtattacaaaaatttaatttgatttgaatgatttggtgt--atatgttatatagatttaatttt |
34288304 |
T |
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| Q |
212 |
nnnacagggtatatattataagaatttgatttgtatacat |
251 |
Q |
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| T |
34288303 |
ttaagagggcatatattataagaatttaatttgtatacat |
34288264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 13 - 181
Target Start/End: Complemental strand, 34282089 - 34281922
Alignment:
| Q |
13 |
tgaaggtgaaacatttgataatgaagacctctttgcaccagtttgagtttgaaggaatcacattcatgctaaacagctgccctaatctagagcatctcac |
112 |
Q |
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|||||||||||||||||||||||||||||||||| || ||||| ||||||| | ||||||||| ||||||| || |||||||| ||||| ||||| | |
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| T |
34282089 |
tgaaggtgaaacatttgataatgaagacctctttacattagtttaagtttgaggaaatcacatttatgctaacgagttgccctaacttagagtatctcgc |
34281990 |
T |
|
| Q |
113 |
aattgaaattattgagaaaagatatatgaatgtaagtattacaaaaatttaattttctttaaatgattt |
181 |
Q |
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| T |
34281989 |
aattgaaattgttgaagaaaaatatatgaaggtaagtattacaaaattttaatttt-tttaaatgattt |
34281922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 24 - 167
Target Start/End: Complemental strand, 28249124 - 28248981
Alignment:
| Q |
24 |
catttgataatgaagacctctttgcaccagtttgagtttgaaggaatcacattcatgctaaacagctgccctaatctagagcatctcacaattgaaatta |
123 |
Q |
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|||||||||||||||||| |||||||||| |||||||||| ||| | | || ||||||| ||||||||| | |||||| |||||||||||||||| |
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| T |
28249124 |
catttgataatgaagaccgctttgcaccattttgagtttgtgggagtatcttttatgctaagaagctgcccttacttagagcgtctcacaattgaaattg |
28249025 |
T |
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| Q |
124 |
ttgagaaaagatatatgaatgtaagtattacaaaaatttaattt |
167 |
Q |
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|||| ||||| ||| ||||||||||||| |||||| |||| |
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| T |
28249024 |
ttgacgaaagacgcatgtttgtaagtattacataaatttgattt |
28248981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 132
Target Start/End: Complemental strand, 10330966 - 10330846
Alignment:
| Q |
12 |
atgaaggtgaaacatttgataatgaagacctctttgcaccagtttgagtttgaaggaatcacattcatgctaaacagctgccctaatctagagcatctca |
111 |
Q |
| |
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|||| |||||| ||||||||||||||||| |||||||| | ||||||||| |||||| ||||||||||||| || ||||| | |||| | ||||| |
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| T |
10330966 |
atgagggtgaagcatttgataatgaagactgctttgcacaaatttgagtttatgggaatctcattcatgctaaagagttgccccgacttagaacgtctca |
10330867 |
T |
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| Q |
112 |
caattgaaattattgagaaaa |
132 |
Q |
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||||||||||| |||| |||| |
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| T |
10330866 |
caattgaaattgttgataaaa |
10330846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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