View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1946_low_114 (Length: 271)

Name: NF1946_low_114
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1946_low_114
NF1946_low_114
[»] chr4 (5 HSPs)
chr4 (15-257)||(45676746-45676984)
chr4 (173-236)||(10550136-10550200)
chr4 (173-233)||(31322485-31322546)
chr4 (178-233)||(41848495-41848551)
chr4 (172-220)||(31327110-31327158)
[»] chr5 (8 HSPs)
chr5 (175-257)||(7400596-7400678)
chr5 (172-255)||(35430036-35430120)
chr5 (175-257)||(13661627-13661710)
chr5 (172-257)||(41340945-41341031)
chr5 (172-255)||(35428456-35428538)
chr5 (174-233)||(30921767-30921826)
chr5 (172-233)||(18009105-18009167)
chr5 (171-257)||(7658879-7658964)
[»] chr1 (5 HSPs)
chr1 (172-257)||(52022032-52022117)
chr1 (173-254)||(6138118-6138200)
chr1 (172-257)||(6139723-6139809)
chr1 (173-233)||(2595451-2595512)
chr1 (172-209)||(43834908-43834945)
[»] chr8 (3 HSPs)
chr8 (174-257)||(392437-392521)
chr8 (172-220)||(7278216-7278264)
chr8 (173-220)||(3581328-3581375)
[»] chr6 (5 HSPs)
chr6 (172-257)||(14763957-14764043)
chr6 (173-257)||(14766534-14766619)
chr6 (173-257)||(21118558-21118639)
chr6 (183-232)||(20726687-20726737)
chr6 (175-233)||(32341995-32342055)
[»] chr3 (8 HSPs)
chr3 (173-257)||(38183234-38183319)
chr3 (172-229)||(16869899-16869956)
chr3 (172-230)||(3372277-3372336)
chr3 (173-233)||(44081190-44081251)
chr3 (173-206)||(1011211-1011244)
chr3 (173-233)||(1026712-1026770)
chr3 (173-231)||(3371317-3371376)
chr3 (173-220)||(49582517-49582562)
[»] chr7 (4 HSPs)
chr7 (173-257)||(5439980-5440065)
chr7 (173-257)||(5448990-5449075)
chr7 (172-233)||(15588804-15588866)
chr7 (173-233)||(15589939-15590000)
[»] chr2 (4 HSPs)
chr2 (172-233)||(31073833-31073895)
chr2 (173-233)||(4660257-4660318)
chr2 (172-231)||(33301164-33301224)
chr2 (200-255)||(34225143-34225199)


Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 15 - 257
Target Start/End: Complemental strand, 45676984 - 45676746
Alignment:
Q  15 gcaaagtctacatttttggacaaacgtaaccnnnnnnntctttcttggacaaataattgacatacatacttagaccttactattggattcatcttaccat 114  Q
    |||||||||||||||||||||||||||||||       |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  45676984 gcaaagtctacatttttggacaaacgtaaccaaaaaaatctttcttggacaaataagtgacatacatacttagaccttactattggattcatcttaccat 45676885  T
Q  115 aattttcattctagtattcatactttataattaaagtcatcaatttaaaagtttgttttgttgggtttgattgtcaagtttcttgaataaagaaggaggt 214  Q
    ||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45676884 aattttcattctagtattcatactttataa----agtcatcaatttaaaagtttgttttgttgggtttgattgtcaagtttcttgaataaagaaggaggt 45676789  T
Q  215 taaaaatattagttattggtgattatgtcctacatcgcttagt 257  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  45676788 taaaaatattagctattggtgattatgtcctacatcgcttagt 45676746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 173 - 236
Target Start/End: Complemental strand, 10550200 - 10550136
Alignment:
Q  173 tgttgggtttgattgtcaagtttcttgaataaagaaggaggtta-aaaatattagttattggtga 236  Q
    |||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||    
T  10550200 tgttgggtttgattgtcaagtttcttgaataaagaatgaggttaaaaaacattagttattggtga 10550136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 233
Target Start/End: Original strand, 31322485 - 31322546
Alignment:
Q  173 tgttgggtttgattgtcaagtttcttgaataaagaaggagg-ttaaaaatattagttattgg 233  Q
    |||| ||||||||||||||||||||| | |||||||||||| ||||||||||||| ||||||    
T  31322485 tgttaggtttgattgtcaagtttcttaattaaagaaggaggtttaaaaatattagatattgg 31322546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 41848551 - 41848495
Alignment:
Q  178 ggtttgattgtcaagtttcttgaataaagaaggaggtta-aaaatattagttattgg 233  Q
    ||||||||||| ||||||||| ||||||||||||||||| |||||||||| ||||||    
T  41848551 ggtttgattgttaagtttcttaaataaagaaggaggttaaaaaatattagctattgg 41848495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 31327110 - 31327158
Alignment:
Q  172 ttgttgggtttgattgtcaagtttcttgaataaagaaggaggttaaaaa 220  Q
    |||||||||||||||||||| |||||| |||||| |||||| |||||||    
T  31327110 ttgttgggtttgattgtcaaatttcttaaataaaaaaggagattaaaaa 31327158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 175 - 257
Target Start/End: Complemental strand, 7400678 - 7400596
Alignment:
Q  175 ttgggtttgattgtcaagtttcttgaataaagaaggaggttaaaaatattagttattggtgattatgtcctacatcgcttagt 257  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  7400678 ttgggtttgattgtcaagtttcttgaataaagaaagaggttaaaaatattagttattggtgattatgtccgacatcgcttagt 7400596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 172 - 255
Target Start/End: Complemental strand, 35430120 - 35430036
Alignment:
Q  172 ttgttgggtttgattgtcaagtttcttgaataaagaaggaggtta-aaaatattagttattggtgattatgtcctacatcgctta 255  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  35430120 ttgttgggtttgattgtcaagtttcttgaataaagaaggaggttagaaaatattagttattggtgattatgtccgacatcgctta 35430036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 175 - 257
Target Start/End: Original strand, 13661627 - 13661710
Alignment:
Q  175 ttgggtttgattgtcaagtttcttgaataaagaaggaggtt-aaaaatattagttattggtgattatgtcctacatcgcttagt 257  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| | ||||||||||||    
T  13661627 ttgggtttgattgtcaagtttcttgaataaagaaggaggttaaaaaatattagttattagtgattatgttccacatcgcttagt 13661710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 172 - 257
Target Start/End: Original strand, 41340945 - 41341031
Alignment:
Q  172 ttgttgggtttgattgtcaagtttcttgaataaagaaggaggtta-aaaatattagttattggtgattatgtcctacatcgcttagt 257  Q
    ||||| ||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||    
T  41340945 ttgttaggtttaattgtcaaatttcttgaataaagaaggaggttataaaatattagttattggtggttatgtcccacatcgcttagt 41341031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 172 - 255
Target Start/End: Complemental strand, 35428538 - 35428456
Alignment:
Q  172 ttgttgggtttgattgtcaagtttcttgaataaagaaggaggtta-aaaatattagttattggtgattatgtcctacatcgctta 255  Q
    ||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||    
T  35428538 ttgttgggtttgattgtcaagttt--tgaataaagaaggaggttagaaaatattagttattggtgattatgtcccaaatcgctta 35428456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 174 - 233
Target Start/End: Complemental strand, 30921826 - 30921767
Alignment:
Q  174 gttgggtttgattgtcaagtttcttgaataaagaaggaggttaaaaatattagttattgg 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  30921826 gttgggtttgattgtcaagtttcttgaataaagaaggaggttaaaaacattagatattgg 30921767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 18009105 - 18009167
Alignment:
Q  172 ttgttgggtttgattgtcaagtttcttgaataaagaaggaggtt-aaaaatattagttattgg 233  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||    
T  18009105 ttgttgggtttgattgtcaagtttcttaaataaagaaggaggttaaaaaatattagctattgg 18009167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 257
Target Start/End: Original strand, 7658879 - 7658964
Alignment:
Q  171 tttgttgggtttgattgtcaagtttcttgaataaag-aaggaggtt-aaaaatattagttattggtgattatgtcctacatcgcttagt 257  Q
    ||||||||||||||||||||||||| || ||||| | ||||||||| |||||||||||||||||| |   | |||||||||||||||||    
T  7658879 tttgttgggtttgattgtcaagttttttaaataaggaaaggaggttaaaaaatattagttattggag---aagtcctacatcgcttagt 7658964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 5e-34; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 172 - 257
Target Start/End: Original strand, 52022032 - 52022117
Alignment:
Q  172 ttgttgggtttgattgtcaagtttcttgaataaagaaggaggttaaaaatattagttattggtgattatgtcctacatcgcttagt 257  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  52022032 ttgttgggtttgattgtcaagtttcttgaataaggaaggaggttaaaaatattagttattggtgattatgtcccacattgcttagt 52022117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 173 - 254
Target Start/End: Original strand, 6138118 - 6138200
Alignment:
Q  173 tgttgggtttgattgtcaagtttcttgaataaagaaggaggtta-aaaatattagttattggtgattatgtcctacatcgctt 254  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||| |||||||||    
T  6138118 tgttgggtttgattgtcaagtttcttgaataaagaaggaggttagaaaaaattagttattggtgattatatcccacatcgctt 6138200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 172 - 257
Target Start/End: Original strand, 6139723 - 6139809
Alignment:
Q  172 ttgttgggtttgattgtcaagtttcttgaataaagaaggaggtta-aaaatattagttattggtgattatgtcctacatcgcttagt 257  Q
    |||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||| ||||||||| | ||| ||||||||    
T  6139723 ttgttgggtttgattgtcaagttttttgaataaagaaggaggttagaaaaaattagttattgatgattatgttccacaccgcttagt 6139809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 173 - 233
Target Start/End: Complemental strand, 2595512 - 2595451
Alignment:
Q  173 tgttgggtttgattgtcaagtttcttgaataaagaaggaggttaaaaa-tattagttattgg 233  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||| |||||| ||||||    
T  2595512 tgttgggtttgattgtcaagtttcttatataaagaaggaggttaaaaagtattagctattgg 2595451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 209
Target Start/End: Original strand, 43834908 - 43834945
Alignment:
Q  172 ttgttgggtttgattgtcaagtttcttgaataaagaag 209  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  43834908 ttgttgggtttgattgtcaagtttcttaaataaagaag 43834945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 174 - 257
Target Start/End: Complemental strand, 392521 - 392437
Alignment:
Q  174 gttgggtttgattgtcaagtttcttgaataaagaaggaggtta-aaaatattagttattggtgattatgtcctacatcgcttagt 257  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  392521 gttgggtttgattgtcaagtttcttgaataaagaaggaggttagaaaatattagttattggtgattatgtcccacatcgcttagt 392437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 172 - 220
Target Start/End: Complemental strand, 7278264 - 7278216
Alignment:
Q  172 ttgttgggtttgattgtcaagtttcttgaataaagaaggaggttaaaaa 220  Q
    ||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  7278264 ttgttgggtttgattgtcaagtttcttaaataaataaggaggttaaaaa 7278216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 220
Target Start/End: Original strand, 3581328 - 3581375
Alignment:
Q  173 tgttgggtttgattgtcaagtttcttgaataaagaaggaggttaaaaa 220  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||    
T  3581328 tgttaggtttgattgtcaagtttcttaaataaagaaggaggttaaaaa 3581375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 172 - 257
Target Start/End: Complemental strand, 14764043 - 14763957
Alignment:
Q  172 ttgttgggtttgattgtcaagtttcttgaataaagaaggaggtta-aaaatattagttattggtgattatgtcctacatcgcttagt 257  Q
    |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  14764043 ttgttgggtttgattgtcaagtttgttgaataaagaaggaggttagaaaatattagttattggtgattatgtcccacatcgcttagt 14763957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 173 - 257
Target Start/End: Complemental strand, 14766619 - 14766534
Alignment:
Q  173 tgttgggtttgattgtcaagtttcttgaataaagaaggaggtta-aaaatattagttattggtgattatgtcctacatcgcttagt 257  Q
    ||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||| ||||| ||||||    
T  14766619 tgttgggtttgattgtcaagtttgttgaataaacaaggaggttagaaaatattagttattggtgattatgtccaacatcacttagt 14766534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 173 - 257
Target Start/End: Complemental strand, 21118639 - 21118558
Alignment:
Q  173 tgttgggtttgattgtcaagtttcttgaataaagaaggaggttaaaaa-tattagttattggtgattatgtcctacatcgcttagt 257  Q
    ||||||||||||||||||| |||||| |||||    |||||| ||||| |||||||||||||||||||||||| ||||||||||||    
T  21118639 tgttgggtttgattgtcaattttcttaaataa----ggaggtaaaaaaatattagttattggtgattatgtcccacatcgcttagt 21118558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 183 - 232
Target Start/End: Original strand, 20726687 - 20726737
Alignment:
Q  183 gattgtcaagtttcttgaataaagaaggaggtt-aaaaatattagttattg 232  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  20726687 gattgtcaagtttcttgaataaagaaggaggttaaaaaatattagttattg 20726737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 233
Target Start/End: Original strand, 32341995 - 32342055
Alignment:
Q  175 ttgggtttgattgtcaagtttc-ttgaataaagaaggaggtt-aaaaatattagttattgg 233  Q
    |||| ||||||||||||||||| |||||||||||| |||||| |||||||||| |||||||    
T  32341995 ttggatttgattgtcaagtttctttgaataaagaaagaggttaaaaaatattaattattgg 32342055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 7e-27; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 173 - 257
Target Start/End: Complemental strand, 38183319 - 38183234
Alignment:
Q  173 tgttgggtttgattgtcaagtttcttgaataaagaaggaggtta-aaaatattagttattggtgattatgtcctacatcgcttagt 257  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| | | ||||||||||||    
T  38183319 tgttgggtttgattgtcaagtttcttgaataaagaaggaggttagaaaatattagttattggtgactatattccacatcgcttagt 38183234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 172 - 229
Target Start/End: Complemental strand, 16869956 - 16869899
Alignment:
Q  172 ttgttgggtttgattgtcaagtttcttgaataaagaaggaggttaaaaatattagtta 229  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  16869956 ttgttgggtttgattgttaagtttcttgaataaagaagggggttaaaaatattagtta 16869899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 172 - 230
Target Start/End: Original strand, 3372277 - 3372336
Alignment:
Q  172 ttgttgggtttgattgtcaagtttcttgaataaagaaggaggtt-aaaaatattagttat 230  Q
    ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  3372277 ttgttggatttgattgtcaagtttcttgaataaagaaggaggttaaaaaatattagttat 3372336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 233
Target Start/End: Original strand, 44081190 - 44081251
Alignment:
Q  173 tgttgggtttgattgtcaagtttcttgaataaagaaggaggt-taaaaatattagttattgg 233  Q
    |||||||||| ||||||||| |||||||||||||||||||||  ||||||||||||| ||||    
T  44081190 tgttgggtttaattgtcaaggttcttgaataaagaaggaggtaaaaaaatattagttcttgg 44081251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 206
Target Start/End: Original strand, 1011211 - 1011244
Alignment:
Q  173 tgttgggtttgattgtcaagtttcttgaataaag 206  Q
    ||||||||||||||||||||||||||||||||||    
T  1011211 tgttgggtttgattgtcaagtttcttgaataaag 1011244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 233
Target Start/End: Original strand, 1026712 - 1026770
Alignment:
Q  173 tgttgggtttgattgtcaagtttcttgaataaagaaggaggttaaaaatattagttattgg 233  Q
    ||||||||||||||||| |||||||||||||||| ||| |   ||||||||||||||||||    
T  1026712 tgttgggtttgattgtctagtttcttgaataaaggaggtg--aaaaaatattagttattgg 1026770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 231
Target Start/End: Original strand, 3371317 - 3371376
Alignment:
Q  173 tgttgggtttgattgtcaagtttcttgaataaagaaggaggtt-aaaaatattagttatt 231  Q
    ||||| ||||||||||||| ||||||||||||| || ||| || ||||||||||||||||    
T  3371317 tgttgagtttgattgtcaaatttcttgaataaaaaaagagtttaaaaaatattagttatt 3371376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 220
Target Start/End: Original strand, 49582517 - 49582562
Alignment:
Q  173 tgttgggtttgattgtcaagtttcttgaataaagaaggaggttaaaaa 220  Q
    ||||| |||||||||||||  ||||| |||||||||||||||||||||    
T  49582517 tgttgagtttgattgtcaa--ttcttaaataaagaaggaggttaaaaa 49582562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 173 - 257
Target Start/End: Complemental strand, 5440065 - 5439980
Alignment:
Q  173 tgttgggtttgattgtcaagtttcttgaataaagaaggaggtta-aaaatattagttattggtgattatgtcctacatcgcttagt 257  Q
    ||||||||||||||||||||||||||||||||| ||||| |||| |||||||||| ||||||||||||||| | ||||||||||||    
T  5440065 tgttgggtttgattgtcaagtttcttgaataaaaaaggatgttagaaaatattagctattggtgattatgttccacatcgcttagt 5439980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 173 - 257
Target Start/End: Complemental strand, 5449075 - 5448990
Alignment:
Q  173 tgttgggtttgattgtcaagtttcttgaataaagaaggaggtta-aaaatattagttattggtgattatgtcctacatcgcttagt 257  Q
    ||||||||||||||||||||||||||||||||| ||||| |||| |||||||||| ||||||||||||||| | ||||||||||||    
T  5449075 tgttgggtttgattgtcaagtttcttgaataaaaaaggatgttagaaaatattagctattggtgattatgttccacatcgcttagt 5448990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 172 - 233
Target Start/End: Complemental strand, 15588866 - 15588804
Alignment:
Q  172 ttgttgggtttgattgtcaagtttcttgaataaagaaggaggtta-aaaatattagttattgg 233  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  15588866 ttgttgggtatgattgtcaagtttcttgaataaagaaggaggttacaaaatattagttattgg 15588804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 173 - 233
Target Start/End: Complemental strand, 15590000 - 15589939
Alignment:
Q  173 tgttgggtttgattgtcaagtttcttgaataaagaaggaggtta-aaaatattagttattgg 233  Q
    |||| |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  15590000 tgtttggtttgattgtcaaatttcttgaataaagaaggaggttaaaaaatattagttattgg 15589939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 172 - 233
Target Start/End: Complemental strand, 31073895 - 31073833
Alignment:
Q  172 ttgttgggtttgattgtcaagtttcttgaataaagaaggaggt-taaaaatattagttattgg 233  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  31073895 ttgttgggtttgattgtcaagtttcttgaataaagaaggaggtgaaaaaatattagttattgg 31073833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 173 - 233
Target Start/End: Complemental strand, 4660318 - 4660257
Alignment:
Q  173 tgttgggtttgattgtcaagtttcttgaataaagaaggaggtt-aaaaatattagttattgg 233  Q
    |||||||||||||||||||||||||| ||||||||||||| || ||||||||||| ||||||    
T  4660318 tgttgggtttgattgtcaagtttcttaaataaagaaggagattgaaaaatattagctattgg 4660257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 172 - 231
Target Start/End: Complemental strand, 33301224 - 33301164
Alignment:
Q  172 ttgttgggtttgattgtcaagtttcttgaataaagaaggaggtt-aaaaatattagttatt 231  Q
    ||||||||||||| ||||||||||||| |||||| ||||||||| ||||||||||| ||||    
T  33301224 ttgttgggtttgaatgtcaagtttcttaaataaataaggaggttgaaaaatattagctatt 33301164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 200 - 255
Target Start/End: Complemental strand, 34225199 - 34225143
Alignment:
Q  200 aataaagaaggaggttaaaaa-tattagttattggtgattatgtcctacatcgctta 255  Q
    |||||||||  |||||||||| |||||||||||| ||||||||||||||||||||||    
T  34225199 aataaagaataaggttaaaaaatattagttattgatgattatgtcctacatcgctta 34225143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University