View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1946_low_118 (Length: 252)
Name: NF1946_low_118
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_low_118 |
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Alignment Details
Target: chr4 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 68 - 243
Target Start/End: Complemental strand, 785564 - 785390
Alignment:
| Q |
68 |
actatagaaagttatctttcaatgaagtatttaatttgttttaagtaacttgagagatttaatcttaacaactgcgcgtaaaagatagtctatttcttgn |
167 |
Q |
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| T |
785564 |
actatagaaagttatctttcaatgaagtatttaatttgttttaagtaacttgagagatt-aatcttaacaactgcgcgtaaaagatagtctatttcttga |
785466 |
T |
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| Q |
168 |
nnnnnntaatataaacagagtcatgccctccactcctagtttcaattattattttggtaaatcatactcttcattt |
243 |
Q |
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| T |
785465 |
aaaaaataatataaacagagtcatgccctccactcctagtttcaattattattttggtaaatcatactctccattt |
785390 |
T |
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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 785614 - 785582
Alignment:
| Q |
18 |
agatttatcggaagatatctttcgattgtgtaa |
50 |
Q |
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| T |
785614 |
agatttatcggaagatatctttcgattgtgtaa |
785582 |
T |
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