View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1946_low_12 (Length: 555)
Name: NF1946_low_12
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-135; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 16 - 317
Target Start/End: Complemental strand, 41548675 - 41548369
Alignment:
| Q |
16 |
caaatcacatgtgtatggtaccattcnnnnnnnatcaataggaaccgaac--gatattc---gagtttacaacagtcacacacttggctccatgcaagag |
110 |
Q |
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| T |
41548675 |
caaatcacatgtgtatggtacgattctttttttatcaataggaaccgaactcgatatcccaagagtttacaacagtcacacacttggctccatgcaagag |
41548576 |
T |
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| Q |
111 |
tgtgttcctttaagatctgggaacataaatgccaacatagccaacccccacaacaaagaaggcaatagattgcaggaaaagatatatatagcactgattc |
210 |
Q |
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| T |
41548575 |
tgtgttcctctaagatctgggaacatagatgccaacatagccaacccccacaacaaagaaggcaatagattgcaggaaaagatatatatagcactgattc |
41548476 |
T |
|
| Q |
211 |
ttcccaaaggcaagatcgtagcatccacacaaaaagagataggctcccacaccaagttctaggaaatgaatcctgttttaacatcaacaaacaagtagaa |
310 |
Q |
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| T |
41548475 |
ttcccaaaggcaagatcgtagcatccacacaaaaagagataggctcccacaccaagttctaggaaatgaatcctgttttaacatcaacaaacaagtagaa |
41548376 |
T |
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| Q |
311 |
aagtgag |
317 |
Q |
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||||||| |
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| T |
41548375 |
aagtgag |
41548369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 336 - 546
Target Start/End: Complemental strand, 41548341 - 41548124
Alignment:
| Q |
336 |
aagtaagtacaaggaatactcgaatccagcaacatac------tatcctcgttaaaagggtaa-taaactttaccttccatcgatcgtgatacgaggctt |
428 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||| |
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| T |
41548341 |
aagtaagtacaaggaatactcgaatccagcaacatatatataatatcctcgttgaaagggtaaataaactttaccttccatcgatagtgatacgaggctt |
41548242 |
T |
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| Q |
429 |
tctagctgctttacctcctgattttattttaagagcgtcacccaatttctcagtaaccacccattcatttaccctacctgcctcaaacaaacctataagt |
528 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41548241 |
tctagctgctttacctcctgattttattttaagagcgtcacccaatttctcagtaaccacccattcatttaccctacctgcctcaaacaaacctataagt |
41548142 |
T |
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| Q |
529 |
gttgccttggtcctatgc |
546 |
Q |
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|||||||||||||||||| |
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| T |
41548141 |
gttgccttggtcctatgc |
41548124 |
T |
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