View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1946_low_121 (Length: 250)

Name: NF1946_low_121
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1946_low_121
NF1946_low_121
[»] chr3 (2 HSPs)
chr3 (161-240)||(49639554-49639633)
chr3 (17-91)||(49639703-49639777)
[»] chr7 (1 HSPs)
chr7 (17-67)||(17245434-17245484)
[»] chr2 (1 HSPs)
chr2 (20-64)||(23378401-23378445)


Alignment Details
Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 161 - 240
Target Start/End: Complemental strand, 49639633 - 49639554
Alignment:
Q  161 ggtctcttgattaatttacaggttatgttttgacccctaagtaataaatattacgttttaatcccataattccatctctg 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49639633 ggtctcttgattaatttacaggttatgttttgacccctaagtaataaatattacgttttaatcccataattccatctctg 49639554  T

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Target: chr3; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 49639777 - 49639703
Alignment:
Q  17 aactttattaccgacatcatcatcaagagaaataacgcgatttacctttttcaagttgtagcagaggctgtgatt 91  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  49639777 aactttattaccgacatcattatcaagagaaataacgcgatttacctttttcaagttgtagcaggggctgtgatt 49639703  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 17245434 - 17245484
Alignment:
Q  17 aactttattaccgacatcatcatcaagagaaataacgcgatttaccttttt 67  Q
    ||||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  17245434 aactttattaccgacatcatcgtcaagagaaataatgcgatttaccttttt 17245484  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 23378445 - 23378401
Alignment:
Q  20 tttattaccgacatcatcatcaagagaaataacgcgatttacctt 64  Q
    ||||||||| |||||||| ||||||||||||| ||||||||||||    
T  23378445 tttattacctacatcatcgtcaagagaaataatgcgatttacctt 23378401  T

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