View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1946_low_124 (Length: 249)
Name: NF1946_low_124
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_low_124 |
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Alignment Details
Target: chr4 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 52415486 - 52415739
Alignment:
| Q |
1 |
actcatagagataatagttagccttattatagagagcctttcaccactataaacacaactc------------caaaaaataaagccatcatcaatgata |
88 |
Q |
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| T |
52415486 |
actcatagaaataatagttagcctaactatagagagcctttcacaactataaacacaactctaaatagatggccaaaaaataaagctatcatcaatgata |
52415585 |
T |
|
| Q |
89 |
gcatgagggagcttttccctggtaatagagattgcaaagttagcggagattaaaagaacatataaaaataacattaatattgatacaagagattactggg |
188 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
52415586 |
gcatgagggagcttttccctggtaatagagattgcaaagttagcagagattaaaagaacatataaaaataacattaatattgatacaagagattacaggg |
52415685 |
T |
|
| Q |
189 |
nnnnnnnntaattatttgatgcaacaaaaacctctttctatgtttatattattcg |
243 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
52415686 |
-aaaaaaataattatttgatgcaacaaaaacctctttctatgtttatatttttcg |
52415739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 68 - 164
Target Start/End: Original strand, 52404795 - 52404895
Alignment:
| Q |
68 |
ataaagccatcatcaatgatagcatg----agggagcttttccctggtaatagagattgcaaagttagcggagattaaaagaacatataaaaataacatt |
163 |
Q |
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|||||||||||||||||||||||||| || | ||||||||||| |||||||||||||||||||||| ||||||||| || |||| ||| |||||||| |
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| T |
52404795 |
ataaagccatcatcaatgatagcatgcatgagagtgcttttccctgataatagagattgcaaagttagcagagattaaaggagcatacaaatataacatt |
52404894 |
T |
|
| Q |
164 |
a |
164 |
Q |
| |
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| |
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| T |
52404895 |
a |
52404895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 167
Target Start/End: Original strand, 31249007 - 31249047
Alignment:
| Q |
127 |
gttagcggagattaaaagaacatataaaaataacattaata |
167 |
Q |
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||||||| | |||||||||||||| |||||||||||||||| |
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| T |
31249007 |
gttagcgaaaattaaaagaacatagaaaaataacattaata |
31249047 |
T |
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