View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1946_low_125 (Length: 249)

Name: NF1946_low_125
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1946_low_125
NF1946_low_125
[»] chr3 (1 HSPs)
chr3 (105-234)||(8011273-8011402)
[»] chr5 (3 HSPs)
chr5 (142-213)||(38822281-38822352)
chr5 (143-207)||(18977372-18977436)
chr5 (142-213)||(10859855-10859926)
[»] chr1 (7 HSPs)
chr1 (134-226)||(18325112-18325204)
chr1 (142-200)||(6744832-6744890)
chr1 (142-213)||(23700467-23700538)
chr1 (139-213)||(43018458-43018532)
chr1 (144-209)||(36413755-36413820)
chr1 (139-200)||(41516982-41517043)
chr1 (161-226)||(42423191-42423256)
[»] chr4 (3 HSPs)
chr4 (137-213)||(28178862-28178938)
chr4 (158-212)||(19067431-19067485)
chr4 (142-202)||(51093256-51093315)
[»] chr2 (5 HSPs)
chr2 (143-209)||(6767673-6767739)
chr2 (156-226)||(11510965-11511034)
chr2 (136-213)||(5063992-5064069)
chr2 (184-213)||(37541336-37541365)
chr2 (186-226)||(38129470-38129510)


Alignment Details
Target: chr3 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 105 - 234
Target Start/End: Complemental strand, 8011402 - 8011273
Alignment:
Q  105 gaaatgcaaaatcaacatgtgttacgttgtcgagtaaaattgattataacgtgaatctagaatttggagtttttgtatgtacaattgatttttagcctca 204  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  8011402 gaaatgcaaaatcaacttgtgttacgttgtcgagtaaaattgattataacgtgaatctagaatttggagtttttgtatgtacaattgatttttagcctcg 8011303  T
Q  205 aatttattgatcagcccactttcacacaat 234  Q
    ||||||| ||||||||||||||||||||||    
T  8011302 aatttatcgatcagcccactttcacacaat 8011273  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 142 - 213
Target Start/End: Complemental strand, 38822352 - 38822281
Alignment:
Q  142 aattgattataacgtgaatctagaatttggagtttttgtatgtacaattgatttttagcctcaaatttattg 213  Q
    |||||||| || | |||||||||||||||||||||||   | ||||||||||||||| ||||||||||||||    
T  38822352 aattgattctagcttgaatctagaatttggagtttttacctttacaattgatttttaacctcaaatttattg 38822281  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 207
Target Start/End: Complemental strand, 18977436 - 18977372
Alignment:
Q  143 attgattataacgtgaatctagaatttggagtttttgtatgtacaattgatttttagcctcaaat 207  Q
    ||||||| | || |||| ||||||||| |||||||||| | ||||||||||||||||||| ||||    
T  18977436 attgattctgacttgaagctagaatttagagtttttgtttctacaattgatttttagccttaaat 18977372  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 213
Target Start/End: Complemental strand, 10859926 - 10859855
Alignment:
Q  142 aattgattataacgtgaatctagaatttggagtttttgtatgtacaattgatttttagcctcaaatttattg 213  Q
    |||||||| |||| |||| ||||||||||||| |||||  |  ||| |||||||||| ||||||||||||||    
T  10859926 aattgattctaacttgaagctagaatttggagcttttgcctcaacatttgatttttaacctcaaatttattg 10859855  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 134 - 226
Target Start/End: Complemental strand, 18325204 - 18325112
Alignment:
Q  134 tcgagtaaaattgattataacgtgaatctagaatttggagtttttgtatgtacaattgatttttagcctcaaatttattgatcagcccacttt 226  Q
    ||||||| |||||||| |||| ||||   |||||| ||||||||||| | ||||||||||||||| ||||| |||||||  ||| ||||||||    
T  18325204 tcgagtagaattgattttaacttgaaatcagaattaggagtttttgtttctacaattgatttttatcctcagatttattattcaacccacttt 18325112  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 142 - 200
Target Start/End: Original strand, 6744832 - 6744890
Alignment:
Q  142 aattgattataacgtgaatctagaatttggagtttttgtatgtacaattgatttttagc 200  Q
    ||||||||||| | |||| |||||||||| ||||||||| | |||||||||||||||||    
T  6744832 aattgattatagcttgaagctagaatttgaagtttttgtctctacaattgatttttagc 6744890  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 213
Target Start/End: Original strand, 23700467 - 23700538
Alignment:
Q  142 aattgattataacgtgaatctagaatttggagtttttgtatgtacaattgatttttagcctcaaatttattg 213  Q
    ||||| ||||||| |||| || ||||||||||||||||  | | | |||||||||||| |||||||||||||    
T  23700467 aattggttataacttgaagctcgaatttggagtttttgcctttgccattgatttttagtctcaaatttattg 23700538  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 213
Target Start/End: Original strand, 43018458 - 43018532
Alignment:
Q  139 taaaattgattataacgtgaatctagaatttggagtttttgtatgtacaattgatttttagcctcaaatttattg 213  Q
    ||||||||||| |||| |||| |||||||||||| |||||   | || ||||||| ||||| |||||||||||||    
T  43018458 taaaattgattctaacatgaagctagaatttggaatttttaattctagaattgatgtttagactcaaatttattg 43018532  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 209
Target Start/End: Original strand, 36413755 - 36413820
Alignment:
Q  144 ttgattataacgtgaatctagaatttggagtttttgtatgtacaattgatttttagcctcaaattt 209  Q
    |||||| |||| ||||  ||||||||| ||||||||  | ||| ||||||||||||||||||||||    
T  36413755 ttgattctaacttgaagttagaatttgaagtttttggctctacgattgatttttagcctcaaattt 36413820  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 200
Target Start/End: Original strand, 41516982 - 41517043
Alignment:
Q  139 taaaattgattataacgtgaatctagaatttggagtttttgtatgtacaattgatttttagc 200  Q
    ||||||||||| |||| ||||  ||||||||||||||||||  | | |||||||||||||||    
T  41516982 taaaattgattctaacttgaagttagaatttggagtttttgcctcttcaattgatttttagc 41517043  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 226
Target Start/End: Complemental strand, 42423256 - 42423191
Alignment:
Q  161 ctagaatttggagtttttgtatgtacaattgatttttagcctcaaatttattgatcagcccacttt 226  Q
    ||||||||| ||| |||||| | || |||||| ||||||| |||||||||||| ||| ||||||||    
T  42423256 ctagaatttagagcttttgtctctaaaattgaattttagcttcaaatttattggtcaacccacttt 42423191  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 213
Target Start/End: Complemental strand, 28178938 - 28178862
Alignment:
Q  137 agtaaaattgattataacgtgaatctagaatttggagtttttgtatgtacaattgatttttagcctcaaatttattg 213  Q
    ||||||||||||| |||  ||||||||| |||||||||||| |    ||||||||| ||||||||| ||||||||||    
T  28178938 agtaaaattgattctaatttgaatctagtatttggagttttcgccactacaattgaattttagccttaaatttattg 28178862  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 212
Target Start/End: Original strand, 19067431 - 19067485
Alignment:
Q  158 aatctagaatttggagtttttgtatgtacaattgatttttagcctcaaatttatt 212  Q
    ||||||||||||| || |||||| | ||||||||||| |||||||| ||||||||    
T  19067431 aatctagaatttgaagcttttgtctctacaattgattattagcctcgaatttatt 19067485  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 202
Target Start/End: Original strand, 51093256 - 51093315
Alignment:
Q  142 aattgattataacgtgaatctagaatttggagtttttgtatgtacaattgatttttagcct 202  Q
    |||||||| |||| |||| ||||||||||||| |||||  | |||||||||||||||||||    
T  51093256 aattgattctaac-tgaagctagaatttggagcttttgcctctacaattgatttttagcct 51093315  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 209
Target Start/End: Original strand, 6767673 - 6767739
Alignment:
Q  143 attgattataacgtgaatctagaatttggagtttttgtatgtacaattgatttttagcctcaaattt 209  Q
    ||||||| |||| |||| ||||||||||||| |||||  | ||||||||| ||||||| ||||||||    
T  6767673 attgattctaacttgaagctagaatttggagcttttgcttctacaattgaattttagcttcaaattt 6767739  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 226
Target Start/End: Original strand, 11510965 - 11511034
Alignment:
Q  156 tgaatctagaatttggagtttttgtatgtacaattgatttttagcctcaaatttattgatcagcccacttt 226  Q
    |||| |||||||||||||||||||  | ||||||| | ||||| |||||||||||||| ||| ||||||||    
T  11510965 tgaagctagaatttggagtttttgcctctacaattta-ttttaacctcaaatttattgttcaacccacttt 11511034  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 213
Target Start/End: Complemental strand, 5064069 - 5063992
Alignment:
Q  136 gagtaaaattgattataacgtgaatctagaatttggagtttttgtatgtacaattgatttttagcctcaaatttattg 213  Q
    ||||| |||||||| |||| |||| |||||| |||||||||| || | ||||||||||||| |  ||| |||||||||    
T  5064069 gagtagaattgattctaacatgaagctagaaattggagttttagtctctacaattgattttcactctcgaatttattg 5063992  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 213
Target Start/End: Original strand, 37541336 - 37541365
Alignment:
Q  184 tacaattgatttttagcctcaaatttattg 213  Q
    ||||||||||||||||||||||||||||||    
T  37541336 tacaattgatttttagcctcaaatttattg 37541365  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 226
Target Start/End: Complemental strand, 38129510 - 38129470
Alignment:
Q  186 caattgatttttagcctcaaatttattgatcagcccacttt 226  Q
    |||||||||||||||||||||||||||| ||| | ||||||    
T  38129510 caattgatttttagcctcaaatttattgttcatctcacttt 38129470  T

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