View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1946_low_127 (Length: 248)
Name: NF1946_low_127
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_low_127 |
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Alignment Details
Target: chr3 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 31 - 238
Target Start/End: Original strand, 44520682 - 44520881
Alignment:
| Q |
31 |
ctggtttccgttccatagatgcaagaactttctcaaattgaagcttgcacgagtggaattgtctctatcaacaattcaagataaaatttgatatgacaag |
130 |
Q |
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| T |
44520682 |
ctggttcccgttctatagatgcaagaactttctcaaattgaagcatgcacgagt--------ctctatcaacaattaaagataaaatttgatatgacaag |
44520773 |
T |
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| Q |
131 |
attttagagcatatacaaaggtagtacaaggcacgagctatgggaccatatatatcatacccgattgctttcacaattggtctctttgtaatgaatgatg |
230 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
44520774 |
attttagaacatatacaaaggtagtacaaggcacgagctatgggaccatatatatcatacccgattgctttcacaattgatctctttgtaatgaatgatg |
44520873 |
T |
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