View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1946_low_13 (Length: 554)

Name: NF1946_low_13
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1946_low_13
NF1946_low_13
[»] chr6 (3 HSPs)
chr6 (205-539)||(7557970-7558302)
chr6 (1-155)||(7558351-7558505)
chr6 (388-457)||(31559234-31559304)
[»] chr5 (4 HSPs)
chr5 (376-457)||(33818905-33818986)
chr5 (377-457)||(33737404-33737484)
chr5 (376-452)||(10473257-10473333)
chr5 (380-457)||(8462024-8462102)
[»] chr2 (3 HSPs)
chr2 (376-457)||(36401166-36401248)
chr2 (384-421)||(6406909-6406946)
chr2 (381-419)||(31467702-31467740)
[»] chr8 (1 HSPs)
chr8 (376-459)||(35809819-35809903)
[»] chr1 (1 HSPs)
chr1 (385-456)||(3771561-3771632)
[»] chr7 (2 HSPs)
chr7 (376-457)||(18310996-18311078)
chr7 (380-457)||(43380511-43380589)
[»] chr4 (1 HSPs)
chr4 (385-421)||(9031287-9031323)


Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 205 - 539
Target Start/End: Complemental strand, 7558302 - 7557970
Alignment:
Q  205 ctagacaggtttgttgttgattgatgttagactcgtgttgtaatttttctctctattttgtgcatatcttgtgccatcattgaggtttaacttatttgaa 304  Q
    |||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  7558302 ctaggcaggttttttgttgattgatgttagactcttgttgtaatttttctctctattttgtgcacatcttgtgccatcatagaggtttaacttatttgaa 7558203  T
Q  305 ttc-tttggccgtttaaaaatatatattgtaagaatcaaatgtataactaatatttcctccgtctgagggatggacggatctaggaatatatttcaagtg 403  Q
    ||| ||||||||||||||||||||||||  |||||| |||||||||||||||||||||||||| | ||    |||||||||||||||||||||| |||||    
T  7558202 ttcttttggccgtttaaaaatatatattaaaagaataaaatgtataactaatatttcctccgtttcag----ggacggatctaggaatatattttaagtg 7558107  T
Q  404 tggctaaataagtagcaatcgaaaaaataaagatttttaatattttatactttaacggtggattttttagtcactatttgcg-ctctaaacgtattagag 502  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||  |||||||||||||| ||||| || |||||||||||||||||    
T  7558106 tggctaaataagtagcagttgaaaaaataaagatttttaatattttatactttaacgacggattttttagtcattatttacgtctctaaacgtattagag 7558007  T
Q  503 accgatttttactcagcaactagagtttcagtctctg 539  Q
    ||| ||||||| ||| |||||||||||||||||||||    
T  7558006 accaatttttattcatcaactagagtttcagtctctg 7557970  T

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Target: chr6; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 7558505 - 7558351
Alignment:
Q  1 aattattgacagagtcatatgttctaggatgtcgtactacattatttcatactcaataaaatacgataagattaagatagtagacttctatggtcacaaa 100  Q
    |||||||||||| ||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7558505 aattattgacagggtcatagtttctaggatgtcatactacattatttcatactcaataaaatacgataagattaagatagtagacttctatggtcacaaa 7558406  T
Q  101 attatagatttaatattttgattattttgaaacaattaagagtaatatagttgaa 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7558405 attatagatttaatattttgattattttgaaacaattaagagtaatatagttgaa 7558351  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 388 - 457
Target Start/End: Complemental strand, 31559304 - 31559234
Alignment:
Q  388 gaatatatttcaagtgtggctaaataagtagcaatcgaaaaaataaa-gatttttaatattttatacttta 457  Q
    ||||| |||| |||||||| ||||||||||||||  |||| ||| |  |||||||||||||||||||||||    
T  31559304 gaatacattttaagtgtggttaaataagtagcaactgaaataatgatcgatttttaatattttatacttta 31559234  T

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Target: chr5 (Bit Score: 54; Significance: 9e-22; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 376 - 457
Target Start/End: Original strand, 33818905 - 33818986
Alignment:
Q  376 ggacggatctaggaatatatttcaagtgtggctaaataagtagcaatcgaaaaaataaagatttttaatattttatacttta 457  Q
    ||||| ||||||||||| |||||||||||||||||||||| ||||| |||||||| |  |||||||||||||||||||||||    
T  33818905 ggacgaatctaggaatacatttcaagtgtggctaaataagaagcaaccgaaaaaacactgatttttaatattttatacttta 33818986  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 377 - 457
Target Start/End: Complemental strand, 33737484 - 33737404
Alignment:
Q  377 gacggatctaggaatatatttcaagtgtggctaaataagtagcaatcgaaaaaataaagatttttaatattttatacttta 457  Q
    |||||||||||| ||| |||| ||||||||| |||||||||||||||||| ||  |  |||||||||||||||||||||||    
T  33737484 gacggatctaggcatacattttaagtgtggcaaaataagtagcaatcgaagaatgatcgatttttaatattttatacttta 33737404  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 376 - 452
Target Start/End: Complemental strand, 10473333 - 10473257
Alignment:
Q  376 ggacggatctaggaatatatttcaagtgtggctaaataagtagcaatcgaaaaaataaagatttttaatattttata 452  Q
    ||||||||||| ||||| |||| ||||||||||||||||||||||| | |||||| |   |||||||||||||||||    
T  10473333 ggacggatctatgaatacattttaagtgtggctaaataagtagcaaccaaaaaaagattaatttttaatattttata 10473257  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 380 - 457
Target Start/End: Original strand, 8462024 - 8462102
Alignment:
Q  380 ggatctaggaatatatttcaagtgtggctaaataagtagcaatcgaaaaaat-aaagatttttaatattttatacttta 457  Q
    |||||||  |||| ||||||||||||| ||||||||||||||  |||| ||| |  |||||||||||||||||||||||    
T  8462024 ggatctataaatacatttcaagtgtgggtaaataagtagcaactgaaataatgatcgatttttaatattttatacttta 8462102  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 376 - 457
Target Start/End: Original strand, 36401166 - 36401248
Alignment:
Q  376 ggacggatctaggaatatatttcaagtgtggctaaataagtagcaatcgaaaaaat-aaagatttttaatattttatacttta 457  Q
    ||||||||||| ||||| ||||||||||||||||||||||||| ||  |||| ||| |  |||||||||||||||||||||||    
T  36401166 ggacggatctaagaatacatttcaagtgtggctaaataagtaggaactgaaacaatgattgatttttaatattttatacttta 36401248  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 384 - 421
Target Start/End: Original strand, 6406909 - 6406946
Alignment:
Q  384 ctaggaatatatttcaagtgtggctaaataagtagcaa 421  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  6406909 ctaggaatacatttcaagtgtggctaaataagtagcaa 6406946  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 381 - 419
Target Start/End: Complemental strand, 31467740 - 31467702
Alignment:
Q  381 gatctaggaatatatttcaagtgtggctaaataagtagc 419  Q
    ||||||| |||| ||||||||||||||||||||||||||    
T  31467740 gatctagaaatacatttcaagtgtggctaaataagtagc 31467702  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 376 - 459
Target Start/End: Original strand, 35809819 - 35809903
Alignment:
Q  376 ggacggatctaggaatatatttcaagtgtggctaaataagtagcaatcgaaa-aaataaagatttttaatattttatactttaac 459  Q
    ||||||||||||||||  ||||||||||||||||||||| ||| |||| ||| ||  |  |||||||||||||||||||||||||    
T  35809819 ggacggatctaggaatgcatttcaagtgtggctaaataaatagaaatcaaaataacgatcgatttttaatattttatactttaac 35809903  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 385 - 456
Target Start/End: Original strand, 3771561 - 3771632
Alignment:
Q  385 taggaatatatttcaagtgtggctaaataagtagcaatcgaaaaaataaagatttttaatattttatacttt 456  Q
    |||||||| |||||| ||||||||||||||||||||||| ||| ||| |    |||||||||||||||||||    
T  3771561 taggaatacatttcaggtgtggctaaataagtagcaatcaaaataatgattgattttaatattttatacttt 3771632  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 376 - 457
Target Start/End: Complemental strand, 18311078 - 18310996
Alignment:
Q  376 ggacggatctaggaatatatttcaagtgtggctaaataagtagcaatcgaaa-aaataaagatttttaatattttatacttta 457  Q
    |||||||| |||||||| |||| ||||||||||||||||||||  | ||||| || ||  |||||||||||||||||| ||||    
T  18311078 ggacggatttaggaatacattttaagtgtggctaaataagtagttaccgaaataattatcgatttttaatattttatatttta 18310996  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 380 - 457
Target Start/End: Original strand, 43380511 - 43380589
Alignment:
Q  380 ggatctaggaatatatttcaagtgtggctaaataagtagcaatcgaaaaaat-aaagatttttaatattttatacttta 457  Q
    ||||||||||||| ||||||||| || |||||||||||||||  |||| ||| |  ||| |||||||||||||||||||    
T  43380511 ggatctaggaatacatttcaagtatgactaaataagtagcaactgaaataatgatcgatctttaatattttatacttta 43380589  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 385 - 421
Target Start/End: Original strand, 9031287 - 9031323
Alignment:
Q  385 taggaatatatttcaagtgtggctaaataagtagcaa 421  Q
    ||||||||||||| | |||||||||||||||||||||    
T  9031287 taggaatatattttatgtgtggctaaataagtagcaa 9031323  T

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