View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1946_low_135 (Length: 242)
Name: NF1946_low_135
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_low_135 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 3 - 242
Target Start/End: Original strand, 37936254 - 37936493
Alignment:
| Q |
3 |
taatataccaactatgatactcaccaatgcaacaatgtgaaaagctattctccaaccaggtatgccaaagatcgatgttgaggctagcagtacagcaaag |
102 |
Q |
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| T |
37936254 |
taatataccaactatgatactcaccaatgcaacaatgtgaaaagctattctccaaccaggtatgccaaagatcgatgttgaggctagcagtacagcaaag |
37936353 |
T |
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| Q |
103 |
agattaccaatgatgcttccaaggtttcctgtaagttgcagccacccaaaagccatgccacgattgctatcaacagtggagtcagcaaccagggacagaa |
202 |
Q |
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| T |
37936354 |
agattaccaatgatgcttccaaggtttcctgtaagttgcagccacccaaaagccatgccacgattgctatcaacagtggagtcagcaaccagggacagaa |
37936453 |
T |
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| Q |
203 |
ttgctggagcaacaatggcaagtccaatcccatttaaacc |
242 |
Q |
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| T |
37936454 |
ttgctggagcaacaatggcaagtccaatcccatttaaacc |
37936493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 3 - 236
Target Start/End: Original strand, 37921253 - 37921486
Alignment:
| Q |
3 |
taatataccaactatgatactcaccaatgcaacaatgtgaaaagctattctccaaccaggtatgccaaagatcgatgttgaggctagcagtacagcaaag |
102 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||| ||||| |||||| |
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| T |
37921253 |
taatataccaactatgacactcaccaatgcaacaatgtgaaaagctattctccaaccagatataccaaagattgatgttgaggctagtagtactgcaaag |
37921352 |
T |
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| Q |
103 |
agattaccaatgatgcttccaaggtttcctgtaagttgcagccacccaaaagccatgccacgattgctatcaacagtggagtcagcaaccagggacagaa |
202 |
Q |
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| T |
37921353 |
agagaaccaatgatgcttccgaggtttcctgttagatgaagccacccaaaagctacaccacggttgctatcaattgtggagtcggcaattagggactgga |
37921452 |
T |
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| Q |
203 |
ttgctggagcaacaatggcaagtccaatcccatt |
236 |
Q |
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| T |
37921453 |
ttgctggaataacgatggctagtccaatcccatt |
37921486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 4 - 239
Target Start/End: Original strand, 37925088 - 37925323
Alignment:
| Q |
4 |
aatataccaactatgatactcaccaatgcaacaatgtgaaaagctattctccaaccaggtatgccaaagatcgatgttgaggctagcagtacagcaaaga |
103 |
Q |
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|||||||||||||| | ||| | ||||||||| | |||||||||||||||||||||| |||||||||||| |||||||||||||| ||||| | || | |
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| T |
37925088 |
aatataccaactataacactaatcaatgcaaccagatgaaaagctattctccaaccagatatgccaaagattgatgttgaggctagtagtactgagaaaa |
37925187 |
T |
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| Q |
104 |
gattaccaatgatgcttccaaggtttcctgtaagttgcagccacccaaaagccatgccacgattgctatcaacagtggagtcagcaaccagggacagaat |
203 |
Q |
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| T |
37925188 |
gaccaccaataatacttccaaggtttcctgttagttgtagccacccaaatgccacaccacggttgctatcaatggtggagtcagcaactagagactgaat |
37925287 |
T |
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| Q |
204 |
tgctggagcaacaatggcaagtccaatcccatttaa |
239 |
Q |
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| T |
37925288 |
tgctggaattacaatggctagtccaatgccatttaa |
37925323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 127 - 239
Target Start/End: Complemental strand, 26286902 - 26286790
Alignment:
| Q |
127 |
tttcctgtaagttgcagccacccaaaagccatgccacgattgctatcaacagtggagtcagcaaccagggacagaattgctggagcaacaatggcaagtc |
226 |
Q |
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||||| || ||||| ||||| ||||||||||||||||||||| ||||| |||| ||||| ||||| |||||| ||||||| |||| |||| ||||| | |
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| T |
26286902 |
tttccggttagttgaagccatccaaaagccatgccacgattgttatcatcagtagagtctgcaactagggactgaattgcaggagttacaagtgcaagac |
26286803 |
T |
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| Q |
227 |
caatcccatttaa |
239 |
Q |
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| T |
26286802 |
caatcccatttaa |
26286790 |
T |
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