View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1946_low_137 (Length: 241)
Name: NF1946_low_137
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_low_137 |
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| [»] scaffold0060 (2 HSPs) |
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| [»] scaffold1769 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 220
Target Start/End: Complemental strand, 8348576 - 8348372
Alignment:
| Q |
18 |
atgctaaatttagcagcattggtaatgaatatggctaccctaacaggaacaactaatggagtgaggataataacttggcatatatgagttggtcttgaga |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8348576 |
atgctaaatttagcagcattggtaatgaatatggctaccctaacaggaacaactaatggagtgaggataataacttggcatatatgagttggtcttgaga |
8348477 |
T |
|
| Q |
118 |
ttttgaagtttagcatgttcggaactctacaattc--gacagttgaaagaatgcacttgaaagaggttacgaataaactttcaaaaatgtggaatttcaa |
215 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8348476 |
ttttgaagtttagcatgttcggaactctacaattcgagacagttgaaagaatacacttgaaagaggttacgaataaactttcaaaaatgtggaatttcaa |
8348377 |
T |
|
| Q |
216 |
cttat |
220 |
Q |
| |
|
||||| |
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|
| T |
8348376 |
cttat |
8348372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 100 - 222
Target Start/End: Complemental strand, 8364505 - 8364384
Alignment:
| Q |
100 |
tatgagttggtcttgagattttgaagtttagcatgttcggaactctacaattcgacagttgaaagaatgcacttgaaagaggttacgaataaactttcaa |
199 |
Q |
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||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||| |
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| T |
8364505 |
tatgagttggtcttgagattttgaaatttagcatgttcggcactctacaattcgacagttgaaagaatacacttgatagaggttaagaataaactttcaa |
8364406 |
T |
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| Q |
200 |
aaatgtggaatttcaacttatca |
222 |
Q |
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||| ||||| |||||||||||| |
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| T |
8364405 |
aaa-ctggaacttcaacttatca |
8364384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 48 - 192
Target Start/End: Original strand, 7915429 - 7915577
Alignment:
| Q |
48 |
atggctaccctaacaggaacaactaatggagtgaggataataacttggcatatatgagttggtcttgagattttgaagtttagcatgttcggaactc--t |
145 |
Q |
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|||| |||| ||||||||||||||||||||||||| |||| ||||||| | ||||||||||||||||||||||||| |||||||||||| | |||| | |
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| T |
7915429 |
atggttaccttaacaggaacaactaatggagtgagaataaaaacttggaaggtatgagttggtcttgagattttgaaatttagcatgttctgcactctat |
7915528 |
T |
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| Q |
146 |
acaattc--gacagttgaaagaatgcacttgaaagaggttacgaataaa |
192 |
Q |
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||||||| |||| ||||||| || ||||||| |||||||| ||||||| |
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| T |
7915529 |
acaattcaagacaattgaaaggatacacttgatagaggttaagaataaa |
7915577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 100 - 181
Target Start/End: Complemental strand, 8442710 - 8442627
Alignment:
| Q |
100 |
tatgagttggtcttgagattttgaagtttagcatgttcggaactctacaattc--gacagttgaaagaatgcacttgaaagagg |
181 |
Q |
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|||||||||||||| |||||||||| ||||||||||| || |||||| ||||| || |||||||||||| |||||| ||||| |
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| T |
8442710 |
tatgagttggtcttcagattttgaaatttagcatgttaggcactctagaattcaagatagttgaaagaatagacttgatagagg |
8442627 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 71
Target Start/End: Complemental strand, 8409762 - 8409728
Alignment:
| Q |
37 |
tggtaatgaatatggctaccctaacaggaacaact |
71 |
Q |
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| T |
8409762 |
tggtaatgaatatggttaccctaacaggaacaact |
8409728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 56 - 229
Target Start/End: Original strand, 65260 - 65433
Alignment:
| Q |
56 |
cctaacaggaacaactaatggagtgaggataataacttggcatatatgagttggtcttgagattttgaagtttagcatgttcggaactctacaattc--g |
153 |
Q |
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||||| ||||||||||||||||||||| ||| |||||| | | | |||||||| ||||||||||||| | ||||||||| || ||||||||||| | |
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| T |
65260 |
cctaataggaacaactaatggagtgagattaaaaacttgaaaaaaa-gagttggttttgagattttgaaatatagcatgttaggcactctacaatttaag |
65358 |
T |
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| Q |
154 |
acagttgaaagaatgcacttgaaagaggttacgaataaactttcaaaaatgtggaatttcaacttatcaggttaat |
229 |
Q |
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|||||||||||||| |||||| |||||||| ||||||||||||||||| |||||||||||||||||| |||||| |
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| T |
65359 |
acagttgaaagaataaacttgatagaggttaagaataaactttcaaaaa-ctggaatttcaacttatcatgttaat |
65433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 100 - 181
Target Start/End: Original strand, 69243 - 69326
Alignment:
| Q |
100 |
tatgagttggtcttgagattttgaagtttagcatgttcggaactctacaattc--gacagttgaaagaatgcacttgaaagagg |
181 |
Q |
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||||||||||||||||||||||||| ||||||||||| || |||||| ||||| || |||||||||||| |||||| ||||| |
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| T |
69243 |
tatgagttggtcttgagattttgaaatttagcatgttaggcactctagaattcaagatagttgaaagaatagacttgatagagg |
69326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1769 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold1769
Description:
Target: scaffold1769; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 100 - 229
Target Start/End: Original strand, 322 - 448
Alignment:
| Q |
100 |
tatgagttggtcttgagattttgaagtttagcatgttcggaactctacaattc--gacagttgaaagaatgcacttgaaagaggttacgaataaac-ttt |
196 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||| || |||||| ||||| || |||||||||||| |||||| ||||| |||||| ||| |
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| T |
322 |
tatgagttggtcttgagattttgaaatttagcatgttaggcactctagaattcaagatagttgaaagaatagacttgatagagg------ataaactttt |
415 |
T |
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| Q |
197 |
caaaaatgtggaatttcaacttatcaggttaat |
229 |
Q |
| |
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|| || ||||||||||||||||||| |||||| |
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| T |
416 |
caggaaagtggaatttcaacttatcatgttaat |
448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 149
Target Start/End: Original strand, 24857408 - 24857499
Alignment:
| Q |
58 |
taacaggaacaactaatggagtgaggataataacttggcatatatgagttggtcttgagattttgaagtttagcatgttcggaactctacaa |
149 |
Q |
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||||||||||||||||||||||||| |||| ||| ||||| || |||||||||| |||||||||| |||| |||| || ||||||||| |
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| T |
24857408 |
taacaggaacaactaatggagtgagaataaaaacatggcaggtaaaagttggtcttaagattttgaaaattagtctgttaggcactctacaa |
24857499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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