View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1946_low_139 (Length: 240)
Name: NF1946_low_139
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_low_139 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 29311818 - 29312040
Alignment:
| Q |
18 |
taaaaaactaatcatgtaaaatagaaatgttttataatgagtttagtgttttaactgcatacaaaaacaaagcatagaattgaatcacacattgttaatt |
117 |
Q |
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| T |
29311818 |
taaaaaactaatcatgtaaaatagaaatgttttataatgagtttagtgttttaactgcatacaaaaacaaagcatagaattgaatcacacattgttaatt |
29311917 |
T |
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| Q |
118 |
tgtttgcatgaatgaaatacctaatgggatcgcgattcgcgggcgtatttataggtagctagcgcttgaaaatccaatttatttcgtagcaatattgggt |
217 |
Q |
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| T |
29311918 |
tgtttgcatgaatgaaatacctaatgggatcgcgattcgcgggcgtatttataggtagctagcgcttgaaaatccaatttatttcgtagcaatattgggt |
29312017 |
T |
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| Q |
218 |
ttggtttacagcaatcgaaaacg |
240 |
Q |
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| T |
29312018 |
ttggtttacagcaatcgaaaacg |
29312040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 202
Target Start/End: Complemental strand, 29311568 - 29311381
Alignment:
| Q |
18 |
taaaaaactaatcatgtaaaatagaaatgttttataa---tgagtttagtg-ttttaactgcatacaaaaacaaagcatagaattgaatcaca-cat--- |
109 |
Q |
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||||||||||||||||||||| ||||| ||||||||| | ||||||||| |||||||| ||||||||||||||||||| |||||||||||| ||| |
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| T |
29311568 |
taaaaaactaatcatgtaaaacagaaacgttttataagtataagtttagtgcttttaactacatacaaaaacaaagcatacaattgaatcacaccattga |
29311469 |
T |
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| Q |
110 |
--tgttaatttgtttgcatgaatgaaatacctaatgggatcgcgattcgcgggcgtatttataggtagctagcgcttgaaaatccaatttatttc |
202 |
Q |
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| T |
29311468 |
tctgttaatttgttttcatgaatggtatacctaatggga-------tcgtgggcgtatttatagctagccagcgcttgaaaatccaatttgtttc |
29311381 |
T |
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