View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1946_low_140 (Length: 240)
Name: NF1946_low_140
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_low_140 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 14 - 240
Target Start/End: Original strand, 29719060 - 29719289
Alignment:
| Q |
14 |
agagaatggagtgaaacatgtggttcaaaactgcaagcaactgagggagatcaatttgagatatattgatcaactgaacgctgatgttgtttcttcaatg |
113 |
Q |
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| T |
29719060 |
agagaatggagtgaaacatgtggttcaaaactgcaagcaactgagggagatcaatttgagatatatcgatcaactgaacgctaatgttgtttcttcaatg |
29719159 |
T |
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| Q |
114 |
gtattatcaaggccatctttaagaaagatcatcgctcc---aggtttttctttaagtgacagaaagaggaaagtcttcttgcaacgtcatggatgtcttg |
210 |
Q |
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| T |
29719160 |
gtattatcaaggccatctttaagaaagatcatcgctccattaggtttttctttaagtgacagaaagaggaaagtcttcttgcaacgtcatggatgtcttg |
29719259 |
T |
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| Q |
211 |
tttgctagtatattattctcaaactgctgt |
240 |
Q |
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| T |
29719260 |
tttgctagtatattattctcaaactgctgt |
29719289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 14 - 235
Target Start/End: Original strand, 29659033 - 29659257
Alignment:
| Q |
14 |
agagaatggagtgaaacatgtggttcaaaactgcaagcaactgagggagatcaatttgagatatattgatcaactgaacgctgatgttgtttcttcaatg |
113 |
Q |
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| T |
29659033 |
agagaatggagtaaaacatgtggttcaaaactgcacgcaactgactgagatcaatttgagatattgtgatcaagtgaaagctaatgttgtttctttaatg |
29659132 |
T |
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| Q |
114 |
gtattatcaaggccatctttaagaaagatcatcgctcc---aggtttttctttaagtgacagaaagaggaaagtcttcttgcaacgtcatggatgtcttg |
210 |
Q |
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| T |
29659133 |
gtattatcaaggccatctttaagaaagatcatcgctccattaggtttttcttttagtgacagaaagaggaaagtcttcttgcaacgtcattgatgtcttg |
29659232 |
T |
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| Q |
211 |
tttgctagtatattattctcaaact |
235 |
Q |
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| T |
29659233 |
tttgctagtatagtattctcaaact |
29659257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 221
Target Start/End: Complemental strand, 33160629 - 33160568
Alignment:
| Q |
165 |
agtgacagaaagaggaaagtcttcttgcaa-----cgtcatggatgtcttgtttgctagtat |
221 |
Q |
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| T |
33160629 |
agtgacagaaagaagaaagtcttcttgcattgcatcgtcatggatgttttgtttgctagtat |
33160568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 644792 - 644735
Alignment:
| Q |
15 |
gagaatggagtgaaacatgtggttcaaaactgcaagcaactgagggagatcaatttga |
72 |
Q |
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| T |
644792 |
gagaaaggagtgaaacatgtggttgaaaaatgcacacaactgagagagatcgatttga |
644735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 72
Target Start/End: Original strand, 7226021 - 7226078
Alignment:
| Q |
15 |
gagaatggagtgaaacatgtggttcaaaactgcaagcaactgagggagatcaatttga |
72 |
Q |
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| T |
7226021 |
gagaagggattgaagcacgtggtagaaaactgcaagcaactgagagagatcaatttga |
7226078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 7307816 - 7307763
Alignment:
| Q |
20 |
tggagtgaaacatgtggttcaaaactgcaagcaactgagggagatcaatttgag |
73 |
Q |
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| T |
7307816 |
tggattgaagcatgtggtagaaaactgcacgcaactgagggaaatcaatttgag |
7307763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 570303 - 570255
Alignment:
| Q |
24 |
gtgaaacatgtggttcaaaactgcaagcaactgagggagatcaatttga |
72 |
Q |
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| T |
570303 |
gtgaatcatgtggtagaaaactgcacacaactgagggagatcaatttga |
570255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 21235510 - 21235462
Alignment:
| Q |
24 |
gtgaaacatgtggttcaaaactgcaagcaactgagggagatcaatttga |
72 |
Q |
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| T |
21235510 |
gtgaatcatgtggtagaaaactgcacacaactgagggagatcaatttga |
21235462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 6603339 - 6603383
Alignment:
| Q |
14 |
agagaatggagtgaaacatgtggttcaaaactgcaagcaactgag |
58 |
Q |
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| T |
6603339 |
agagaaaggagtgaaacatgtggtagaaaactgcaaacaactgag |
6603383 |
T |
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