View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1946_low_143 (Length: 238)
Name: NF1946_low_143
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_low_143 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 40396623 - 40396403
Alignment:
| Q |
1 |
cattctacttaactgaacagtttcgacatcacatatctcattctgtgtaattttgcttctctcagttatgtcacctacaaccttcaactcctttatactt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40396623 |
cattctacttaactgaacagtttcgacatcacatatctcattctgtgtacttttgcttctctcagttatgtcacctacaaccttcaactcctttatactt |
40396524 |
T |
|
| Q |
101 |
tcatcctttccatttttaatctcatcaatgtgcctattgtttaaccttgctgatgaatcaccttgctttctatgagaagaagaaactccttgtgatattg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40396523 |
tcatcctttccatttttaatctcatcaatgtgcctattgtttaaccttgctgatgaatcaccttgctttctatgagaagaagaaactccttgtgatattg |
40396424 |
T |
|
| Q |
201 |
cttgcagttttgcctcaacaa |
221 |
Q |
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||||||||||||||||||||| |
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| T |
40396423 |
cttgcagttttgcctcaacaa |
40396403 |
T |
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