View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1946_low_146 (Length: 233)
Name: NF1946_low_146
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_low_146 |
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Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 4 - 221
Target Start/End: Original strand, 26147434 - 26147651
Alignment:
| Q |
4 |
ttatgaaggaattcttatattattgtaggttttctatattgatataggtacatgcaagttgggaatgcagttgcagttccagtgtctccagttttaggat |
103 |
Q |
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| T |
26147434 |
ttatgaaggaattcatatattattgaaggttttctatattgatataggtacatgcaagttgggaatgcagttgcagttccagtgtctcgagttttaggat |
26147533 |
T |
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| Q |
104 |
acagtcttggccttgcatatcacagtgttgctgctgatggaccattatatacgctacctgaaaaatttcttgtgattaaaaaaccagcttctgctacatc |
203 |
Q |
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| T |
26147534 |
acagtcttggccttgcatatcaagttgttgctgctgatggaccattatatacgctacctgaaaaatttcttgtgattagaaaaccagcttctgctacatc |
26147633 |
T |
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| Q |
204 |
atctgaagaagttgttgt |
221 |
Q |
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| T |
26147634 |
atctgaagaagttgttgt |
26147651 |
T |
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Target: chr6 (Bit Score: 112; Significance: 9e-57; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 32 - 214
Target Start/End: Complemental strand, 33872546 - 33872359
Alignment:
| Q |
32 |
gttttctatattgatataggtacatgcaagttgggaatgcagttgcagttccagtgtctccagttttaggatacagtcttggccttgcatatcacagtgt |
131 |
Q |
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| T |
33872546 |
gttttatatattgatataggtacgtgcaagttgggaatgtagttgcagttccggtggctcgagctttaggatacagtcttggccttgcatatcaaggtgt |
33872447 |
T |
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| Q |
132 |
tgctgctgatggaccattatatacgctacctgaaaaatttctt-----gtgattaaaaaaccagcttctgctacatcatctgaagaag |
214 |
Q |
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| T |
33872446 |
tgctgctgatggaccgttatatacgctacctgaaaaatttcctgtgaggtgattagaaaaccagattctgctgcatcatctgaagaag |
33872359 |
T |
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