View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1946_low_15 (Length: 534)
Name: NF1946_low_15
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 152; Significance: 3e-80; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 184 - 359
Target Start/End: Original strand, 43227684 - 43227858
Alignment:
| Q |
184 |
gtatgaattgcactttaatctatctattttaatataacaattgactttaagtcgtcaatttaagtaaaaaatggattagtacacaattgtcttatagata |
283 |
Q |
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| T |
43227684 |
gtatgaattgcactttaatctatctattttaatataacaattgactttaagtcgtcaatttaagtaaaaaatggattagtacacaattgtcttgtagata |
43227783 |
T |
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| Q |
284 |
tatctattcatattataataaaagaaaaggtgggacaagtgtccgtcttgatgcttgtaaagacaatgaatattgt |
359 |
Q |
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| T |
43227784 |
tatctattcatattataataaaagaaaaggt-ggacaagtgtccgtcttcatgcttgtaaagaaaataaatattgt |
43227858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 352 - 468
Target Start/End: Original strand, 43228003 - 43228120
Alignment:
| Q |
352 |
aatattgttaatttt-ttattttgaataataatcaatatattaatagatgtatcaaaacattaaactacaacaataattcaaaatcatgaataacaaaag |
450 |
Q |
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| T |
43228003 |
aatattgttaatttttttattttgaataataatcaatatattaatagatgtatcaaaacattaaactacaacaataattcaaaatcatgaataacaaaag |
43228102 |
T |
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| Q |
451 |
caagccactgcttccttc |
468 |
Q |
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| T |
43228103 |
caaaccgctgcttccttc |
43228120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 43227502 - 43227624
Alignment:
| Q |
1 |
aacacaaaatgcagatttaattcaagggagaaataaacatgtttataataagttgttaatgggatgttatacatgnnnnnnnntaagcttattagaagtt |
100 |
Q |
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| T |
43227502 |
aacacaaaatgcagatttaattcaagggagaaataaacatgtttctaatatgttgttaatgggatgttatacatg-aaaaaaataagcttattagaagtt |
43227600 |
T |
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| Q |
101 |
taattatactaaatgggctaccat |
124 |
Q |
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| T |
43227601 |
taattatactaaatgggctaccat |
43227624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 185 - 290
Target Start/End: Original strand, 43237199 - 43237304
Alignment:
| Q |
185 |
tatgaattgcactttaatctatctattttaatataacaattgactttaagtcgtcaatttaagtaaaaaatggattagtacacaattgtcttatagatat |
284 |
Q |
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| T |
43237199 |
tatgaattgcactaaaatctatctattttaatataacaattaactttaatttgtcaatttaagtcaaaaattgattagtacacagttgtcttgtagatat |
43237298 |
T |
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| Q |
285 |
atctat |
290 |
Q |
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|||||| |
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| T |
43237299 |
atctat |
43237304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 364 - 460
Target Start/End: Original strand, 43237966 - 43238062
Alignment:
| Q |
364 |
tttttattttgaataataatcaatatattaatagatgtatcaaaacattaaactacaacaataattcaaaatcatgaataacaaaagcaagccactg |
460 |
Q |
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| T |
43237966 |
tttttttttttaataataatcaatatattaatagatgtatcaaatcattaaaccacaacaatgatttaaaattataagtaacaaaagcaaaccactg |
43238062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 43237022 - 43237082
Alignment:
| Q |
1 |
aacacaaaatgcagatttaattcaagggagaaataaacatgtttataataagttgttaatg |
61 |
Q |
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| T |
43237022 |
aacacaaaatgcagatttaattcaagggaaaattaaacatgtttataatatggtgttaatg |
43237082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 84 - 121
Target Start/End: Original strand, 43237098 - 43237135
Alignment:
| Q |
84 |
taagcttattagaagtttaattatactaaatgggctac |
121 |
Q |
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| T |
43237098 |
taagcttattagaagtttaattatattaaatgggctac |
43237135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 298 - 351
Target Start/End: Original strand, 43237762 - 43237814
Alignment:
| Q |
298 |
ataataaaagaaaaggtgggacaagtgtccgtcttgatgcttgtaaagacaatg |
351 |
Q |
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| T |
43237762 |
ataataaaagaaaaggtggg-caagtgtctgtctttatgcttgtaaagataatg |
43237814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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