View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1946_low_150 (Length: 227)
Name: NF1946_low_150
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_low_150 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 41429792 - 41429576
Alignment:
| Q |
1 |
aaacaatttgttttttcttagnnnnnnnngcactaatatggaactgagttagctggcaagctggtggatttctattttcttctgtacgattgatcaatat |
100 |
Q |
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| T |
41429792 |
aaacaatttgttttttcttagttttttttgcactaatatggaactgagttagctggcaagctggtggatttctattttcttctgtacgattgatcaatat |
41429693 |
T |
|
| Q |
101 |
aagcatagttataattatatcattaattgcaaactatagatggaaaatcacaaggaagagttttttcatagactactattttagttaaagaggaagaatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41429692 |
aagcatagttataattatatcattaattgcaaactatagatggaaaatcacaaggaagagttttttcatagactactattttagttaaagaggaagaatt |
41429593 |
T |
|
| Q |
201 |
agaaagttttccctttg |
217 |
Q |
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||||||||||||||||| |
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| T |
41429592 |
agaaagttttccctttg |
41429576 |
T |
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