View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1946_low_153 (Length: 227)
Name: NF1946_low_153
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_low_153 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 41652577 - 41652803
Alignment:
| Q |
1 |
aatgacttgacaatatatgtttatctaaggtgtttatcgaacttgattgcaagtatgtggttgacggcttaactaggagactcaacactagttcaatgtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41652577 |
aatgacttgacaatatatgtttatctaaggtgtttatcgaacttgattgcaagtatgtggttgacggcttaactaggagactcaacactagttcaatgtt |
41652676 |
T |
|
| Q |
101 |
tggcgctattattgatatttgcaaaatttcatttagaacctaccaaaactttaagataaatttcattcggaaacaagcaattatagtattgtccatttgc |
200 |
Q |
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|||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41652677 |
tggcgctattattgatatttgcaaaacttcacttagaacctaccaaaactttaagataaatttcattcggaaacaagcaattatagtattgtccatttgc |
41652776 |
T |
|
| Q |
201 |
tagcaaggacgtaattatcttgtacta |
227 |
Q |
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|||||||||| |||||||||||||||| |
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| T |
41652777 |
tagcaaggacataattatcttgtacta |
41652803 |
T |
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Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 22 - 221
Target Start/End: Original strand, 26917285 - 26917482
Alignment:
| Q |
22 |
tatctaaggtgtttatcgaacttgattgcaagtatgtggttgacggcttaactaggagactcaacactagttcaatgtttggcgctattattgatatttg |
121 |
Q |
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| T |
26917285 |
tatctaagatgtctatcgaacttgattgcaagcaagtggttgacggcatagctaggggactcaacaacaattcaatgtttgacgctattcttgatatttg |
26917384 |
T |
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| Q |
122 |
caaaatttcatttagaacctaccaaaactttaagataaatttcattcggaaacaagcaattatagtattgtccatttgctagcaaggacgtaattatctt |
221 |
Q |
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| T |
26917385 |
caaagcttcacttagaatctacaaaaactttaagataagttttattaggagacaagcaa--atagtgttgcccatctactagcaagggcgtcattatctt |
26917482 |
T |
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Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 3 - 150
Target Start/End: Original strand, 43381772 - 43381919
Alignment:
| Q |
3 |
tgacttgacaatatatgtttatctaaggtgtttatcgaacttgattgcaagtatgtggttgacggcttaactaggagactcaacactagttcaatgtttg |
102 |
Q |
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||||||||||||||| || ||||||| |||| ||||||||||||||||||| | ||||||||||| ||| || |||||||||||| | ||| ||||||| |
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| T |
43381772 |
tgacttgacaatataggtctatctaaagtgtctatcgaacttgattgcaagcaagtggttgacggtataattaagagactcaacaccaattccatgtttg |
43381871 |
T |
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| Q |
103 |
gcgctattattgatatttgcaaaatttcatttagaacctaccaaaact |
150 |
Q |
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| T |
43381872 |
acgctattattgatatttgaacaacttcacttaaaacctatcaaaact |
43381919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 22 - 151
Target Start/End: Complemental strand, 24588743 - 24588614
Alignment:
| Q |
22 |
tatctaaggtgtttatcgaacttgattgcaagtatgtggttgacggcttaactaggagactcaacactagttcaatgtttggcgctattattgatatttg |
121 |
Q |
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|||||||||||| ||||||||||||||||||| | |||||||||| | |||||||| |||||||||| | ||| ||||||||||||||| |||||||||| |
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| T |
24588743 |
tatctaaggtgtctatcgaacttgattgcaagcaagtggttgacgacataactaggggactcaacaccaattccatgtttggcgctattcttgatatttg |
24588644 |
T |
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| Q |
122 |
caaaatttcatttagaacctaccaaaactt |
151 |
Q |
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||| |||| |||||| ||| |||||||| |
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| T |
24588643 |
taaagcttcacttagaatctaacaaaactt |
24588614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 22 - 221
Target Start/End: Original strand, 19920694 - 19920891
Alignment:
| Q |
22 |
tatctaaggtgtttatcgaacttgattgcaagtatgtggttgacggcttaactaggagactcaacactagttcaatgtttggcgctattattgatatttg |
121 |
Q |
| |
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|||||||||||| ||| ||||||||||||||| | ||||| || | ||||||| |||||||||| | ||| | ||| || ||||| | ||||||||| |
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| T |
19920694 |
tatctaaggtgtctattgaacttgattgcaagcaaatggttcactacataactagaagactcaacatcaattccacgttcggtgctatcaatgatatttg |
19920793 |
T |
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| Q |
122 |
caaaatttcatttagaacctaccaaaactttaagataaatttcattcggaaacaagcaattatagtattgtccatttgctagcaaggacgtaattatctt |
221 |
Q |
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||||| ||| |||||| ||| |||||||||||| || ||||||| |||||||||||| ||||| || ||||||| |||||||||||| |||||||| |
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| T |
19920794 |
caaaacatcacttagaatctatcaaaactttaagctaggtttcattaggaaacaagcaa--atagtgtttgccatttgttagcaaggacgtcattatctt |
19920891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 26 - 166
Target Start/End: Complemental strand, 9227400 - 9227259
Alignment:
| Q |
26 |
taaggtgtttatcgaacttgattgcaagta--tgtggttgacggcttaactaggagactcaacactagttcaatgtttggcgctattattgatatttgca |
123 |
Q |
| |
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|||||||| ||||||||||||||||||| | |||| | || ||| |||||| |||||||| || | |||| |||||| ||||||||||| |||||| | |
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| T |
9227400 |
taaggtgtctatcgaacttgattgcaagcaaatgtgctggaaggcacaactagaagactcaatacaatttca-tgtttgacgctattattgctatttgta |
9227302 |
T |
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| Q |
124 |
aaatttcatttagaacctaccaaaactttaagataaatttcat |
166 |
Q |
| |
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||| ||||||||||| ||| |||||||||||||||| |||||| |
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| T |
9227301 |
aaacttcatttagaatctatcaaaactttaagataagtttcat |
9227259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 35 - 180
Target Start/End: Original strand, 13922916 - 13923062
Alignment:
| Q |
35 |
tatcgaacttgattgcaagtatgtggttga-cggcttaactaggagactcaacactagttcaatgtttggcgctattattgatatttgcaaaatttcatt |
133 |
Q |
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|||||||||||||| |||||| |||||||| | | | |||||||||||||||||| || |||||| ||| | || || ||||||| ||| |||| | |
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| T |
13922916 |
tatcgaacttgatttcaagtaagtggttgaaccacattcctaggagactcaacactaactcgatgttttgcgttgttctttatatttgtaaagcttcact |
13923015 |
T |
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| Q |
134 |
tagaacctaccaaaactttaagataaatttcattcggaaacaagcaa |
180 |
Q |
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||||| |||||||||||||||||||| ||||||| |||||||||||| |
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| T |
13923016 |
tagaatctaccaaaactttaagataagtttcattaggaaacaagcaa |
13923062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 22 - 159
Target Start/End: Original strand, 8295005 - 8295142
Alignment:
| Q |
22 |
tatctaaggtgtttatcgaacttgattgcaagtatgtggttgacggcttaactaggagactcaacactagttcaatgtttggcgctattattgatatttg |
121 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| | ||| || ||||| || || || ||||||||| | || |||||||||| | || |||||||||| |
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| T |
8295005 |
tatctaaggtgtctatcgaacttgattgcaagcaagtgatttacggcatagcttggggactcaacatcaatttcatgtttggcgttgttcttgatatttg |
8295104 |
T |
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| Q |
122 |
caaaatttcatttagaacctaccaaaactttaagataa |
159 |
Q |
| |
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|||| |||| |||||| || ||||||||||||||||| |
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| T |
8295105 |
caaagcttcacttagaatctgccaaaactttaagataa |
8295142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 26 - 218
Target Start/End: Complemental strand, 35051843 - 35051653
Alignment:
| Q |
26 |
taaggtgtttatcgaacttgattgcaagtatgtggttgacggcttaactaggagactcaacactagttcaatgtttggcgctattattgatatttgcaaa |
125 |
Q |
| |
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|||||||| |||| ||||||||| |||| | ||||||||| | ||||||||||||||||||| | || | ||||| ||| |||||||||||||| ||| |
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| T |
35051843 |
taaggtgtctatcaaacttgattacaagcaagtggttgacaacataactaggagactcaacaccaatttcaagtttgacgcaattattgatatttgaaaa |
35051744 |
T |
|
| Q |
126 |
atttcatttagaacctaccaaaactttaagataaatttcattcggaaacaagcaattatagtattgtccatttgctagcaaggacgtaattat |
218 |
Q |
| |
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| |||| |||||||||||||||||||||||| || ||||||| | | ||||| || ||| ||||| ||||||| |||||| ||||| ||||| |
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| T |
35051743 |
acttcagttagaacctaccaaaactttaagaaaagtttcattagaagacaagaaa--ataatattggccatttgttagcaatgacgtcattat |
35051653 |
T |
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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 74 - 180
Target Start/End: Original strand, 5460861 - 5460967
Alignment:
| Q |
74 |
taggagactcaacactagttcaatgtttggcgctattattgatatttgcaaaatttcatttagaacctaccaaaactttaagataaatttcattcggaaa |
173 |
Q |
| |
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||||| ||||||||| | ||| ||||| ||||||||| | || | ||||||| ||| || |||| ||||||||||||||||||| ||||||| ||| | |
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| T |
5460861 |
taggaaactcaacaccaattccatgttcggcgctattctagagacttgcaaagcttccttgagaatttaccaaaactttaagataagtttcattaggaga |
5460960 |
T |
|
| Q |
174 |
caagcaa |
180 |
Q |
| |
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||||||| |
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| T |
5460961 |
caagcaa |
5460967 |
T |
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