View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1946_low_155 (Length: 225)
Name: NF1946_low_155
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_low_155 |
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Alignment Details
Target: chr2 (Bit Score: 115; Significance: 1e-58; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 76 - 210
Target Start/End: Original strand, 1530044 - 1530178
Alignment:
| Q |
76 |
aatagcaatccgattataatactttggaagcccacttacaaataaaaaaccaccatatattttgaaggagttgcatctagataaatgaaagaataatttt |
175 |
Q |
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| T |
1530044 |
aatagcaatccgattataatactttggaagcccacttacaaataaaaaaccaccatatattttgaaggagttgcacgtaaataaatggaagaataatttt |
1530143 |
T |
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| Q |
176 |
tggatcaatagatgaatgaatgtaatgttaattat |
210 |
Q |
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| T |
1530144 |
tggatcaatacatgaatgaatgtaatgttaattat |
1530178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 1515896 - 1515948
Alignment:
| Q |
158 |
aaatgaaagaataatttttggatcaatagatgaatgaatgtaatgttaattat |
210 |
Q |
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| T |
1515896 |
aaatgaaagaataatttttggatcaatacatgaatgaatgtaatgttaattat |
1515948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 47
Target Start/End: Complemental strand, 1499357 - 1499322
Alignment:
| Q |
12 |
tgagatgaagccacattctattgtttggttttgtat |
47 |
Q |
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| T |
1499357 |
tgagatgaagccacattctattgtttgcttttgtat |
1499322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 207
Target Start/End: Complemental strand, 7978615 - 7978568
Alignment:
| Q |
160 |
atgaaagaataatttttggatcaatagatgaatgaatgtaatgttaat |
207 |
Q |
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| T |
7978615 |
atgaaagaatattctttggatcaatacatgaatgaatgtactgttaat |
7978568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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