View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1946_low_156 (Length: 222)
Name: NF1946_low_156
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_low_156 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 31548915 - 31548713
Alignment:
| Q |
1 |
aaaaacttgtcgacgagttgcaaagacgcttagaagattcagaatataaacttatagaaggggagaggctgcggaaaaaattacacaataccattttggt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31548915 |
aaaaacttgtcgacgagttgcaaagacgcttagaagattcagaatataaacttatagaaggggagaggctgcggaaaaaattacacaataccattttggt |
31548816 |
T |
|
| Q |
101 |
aattcattgaaccaaaagatttgttgattataagnnnnnnntcagacaccttattaatcaatctcagttttaacaggagttaaaagggaacatccgtgta |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31548815 |
aattcattgaaccaaaagatttgttgattataag-aaaatatcagacaccttattaatcaatctcagttttaacaggagttaaaagggaacatccgtgta |
31548717 |
T |
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| Q |
201 |
ttct |
204 |
Q |
| |
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|||| |
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| T |
31548716 |
ttct |
31548713 |
T |
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Target: chr2 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 35 - 102
Target Start/End: Original strand, 34650299 - 34650366
Alignment:
| Q |
35 |
agattcagaatataaacttatagaaggggagaggctgcggaaaaaattacacaataccattttggtaa |
102 |
Q |
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|||| ||||||| ||||||||||||||||||| |||| ||||| ||||||| ||||| |||||||||| |
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| T |
34650299 |
agatgcagaatacaaacttatagaaggggagaagctgaggaaagaattacataatacaattttggtaa |
34650366 |
T |
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