View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1946_low_157 (Length: 221)

Name: NF1946_low_157
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1946_low_157
NF1946_low_157
[»] chr8 (2 HSPs)
chr8 (1-211)||(40020305-40020515)
chr8 (1-209)||(28433387-28433595)
[»] chr6 (3 HSPs)
chr6 (1-211)||(17951712-17951922)
chr6 (1-211)||(35175534-35175743)
chr6 (1-211)||(34344050-34344260)
[»] chr4 (9 HSPs)
chr4 (1-211)||(5484784-5484994)
chr4 (1-211)||(39083883-39084093)
chr4 (1-211)||(39921738-39921948)
chr4 (1-211)||(43779537-43779747)
chr4 (1-209)||(44993959-44994167)
chr4 (3-211)||(42880431-42880639)
chr4 (1-210)||(32652343-32652552)
chr4 (1-109)||(39189626-39189734)
chr4 (181-211)||(39189730-39189760)
[»] chr7 (4 HSPs)
chr7 (1-210)||(45463914-45464123)
chr7 (1-211)||(34691239-34691449)
chr7 (1-196)||(48303334-48303529)
chr7 (1-211)||(4322248-4322452)
[»] chr5 (1 HSPs)
chr5 (1-208)||(42620436-42620643)
[»] chr2 (3 HSPs)
chr2 (1-211)||(11022683-11022893)
chr2 (1-210)||(28246907-28247116)
chr2 (3-208)||(38148742-38148947)
[»] chr1 (1 HSPs)
chr1 (1-200)||(5783608-5783807)
[»] chr3 (1 HSPs)
chr3 (1-211)||(41944818-41945028)


Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 40020515 - 40020305
Alignment:
Q  1 tgcaattccttttttacccctatgtttgccattaccatacatcctcatatttcatacagaacacatcaactaagtctctgtctgttcttcttccctccat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40020515 tgcaattccttttttacccctatgtttgccattaccatacatcctcatatttcatacagaacacatcaactaagtctctgtctgttcttcttccctccat 40020416  T
Q  101 tttcacttctccaagatcatcttcctctccggcgatccagattgcattttttaaggaagatttcgtatgttttgaaggtgacttcgttcatcttcttctc 200  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||| |||| |||||||||||||||    
T  40020415 tttcacttctccaagatcatcatcctctccggcgatcaagattgcatttttgaaggaagatttcgtttgttttgaaggtaactttgttcatcttcttctc 40020316  T
Q  201 ctttttctctg 211  Q
    |||||||||||    
T  40020315 ctttttctctg 40020305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 28433595 - 28433387
Alignment:
Q  1 tgcaattccttttttacccctatgtttgccattaccatacatcctcatatttcatacagaacacatcaactaagtctctgtctgttcttcttccctccat 100  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||    
T  28433595 tgcaattccttttttacccctatgtttcccattaccatacatcctcatatttcatacagaacacatcaactaagtccctatctattcttcttccctccat 28433496  T
Q  101 tttcacttctccaagatcatcttcctctccggcgatccagattgcattttttaaggaagatttcgtatgttttgaaggtgacttcgttcatcttcttctc 200  Q
    ||||||||||||||||||||| ||||||||||||||| || |||||||||| || ||||||||||| |||||||||||| ||||| ||||||||||||||    
T  28433495 tttcacttctccaagatcatcatcctctccggcgatcaagcttgcatttttgaaagaagatttcgtctgttttgaaggtaacttcattcatcttcttctc 28433396  T
Q  201 ctttttctc 209  Q
    |||||||||    
T  28433395 ctttttctc 28433387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 17951922 - 17951712
Alignment:
Q  1 tgcaattccttttttacccctatgtttgccattaccatacatcctcatatttcatacagaacacatcaactaagtctctgtctgttcttcttccctccat 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  17951922 tgcaattccttttttacccctgtgtttgccattaccatacatcctcatatttcatacagaacacatcaactaagtccctgtctgttcttcttccctccat 17951823  T
Q  101 tttcacttctccaagatcatcttcctctccggcgatccagattgcattttttaaggaagatttcgtatgttttgaaggtgacttcgttcatcttcttctc 200  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  17951822 tttcacttctccaagatcatcatcctctccggcgatcaagattgcatttttgaaggaagatttcgtatgttttgaaggtaacttcgttcatcttcttctc 17951723  T
Q  201 ctttttctctg 211  Q
    |||||||||||    
T  17951722 ctttttctctg 17951712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 35175743 - 35175534
Alignment:
Q  1 tgcaattccttttttacccctatgtttgccattaccatacatcctcatatttcatacagaacacatcaactaagtctctgtctgttcttcttccctccat 100  Q
    |||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  35175743 tgcatttccttttttatccctatgtttgtcattaccatacatcctcatatttcatacagaacacatcaactaagtccctgtctgttcttcttccctccat 35175644  T
Q  101 tttcacttctccaagatcatcttcctctccggcgatccagattgcattttttaaggaagatttcgtatgttttgaaggtgacttcgttcatcttcttctc 200  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||| ||||| |||||||||||| ||||||||||||||||||||    
T  35175643 tttcacttctccaagatcatcatcctctccggcgatcaagattgcatttttgaaggaaga-ttcgtctgttttgaaggtaacttcgttcatcttcttctc 35175545  T
Q  201 ctttttctctg 211  Q
    |||||||||||    
T  35175544 ctttttctctg 35175534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 34344050 - 34344260
Alignment:
Q  1 tgcaattccttttttacccctatgtttgccattaccatacatcctcatatttcatacagaacacatcaactaagtctctgtctgttcttcttccctccat 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||| |||  ||||||||||||||||||    
T  34344050 tgcaattccttttttacccctatgtttcccattaccatacatcctcacatttcatacagaacgcatcaactaagtccctggttgttcttcttccctccat 34344149  T
Q  101 tttcacttctccaagatcatcttcctctccggcgatccagattgcattttttaaggaagatttcgtatgttttgaaggtgacttcgttcatcttcttctc 200  Q
    ||||||||||||||||||||| |||||||| |||||| || |||||||||| |||||||||||||| |||||| ||||| ||||||||||||||||||||    
T  34344150 tttcacttctccaagatcatcatcctctccagcgatcaagcttgcatttttgaaggaagatttcgtctgttttaaaggtaacttcgttcatcttcttctc 34344249  T
Q  201 ctttttctctg 211  Q
    |||||||||||    
T  34344250 ctttttctctg 34344260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 5484784 - 5484994
Alignment:
Q  1 tgcaattccttttttacccctatgtttgccattaccatacatcctcatatttcatacagaacacatcaactaagtctctgtctgttcttcttccctccat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  5484784 tgcaattccttttttacccctatgtttgccattaccatacatcctcatatttcatacagaacacatcaactaagtccatgtctgttcttcttccctccat 5484883  T
Q  101 tttcacttctccaagatcatcttcctctccggcgatccagattgcattttttaaggaagatttcgtatgttttgaaggtgacttcgttcatcttcttctc 200  Q
    |||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  5484884 tttcacttctccaagatcatcttcctcttcggcgatcaagattgcatttttgaaggaagatttcgtatgttttgaaggtaacttcgttcatcttcttctc 5484983  T
Q  201 ctttttctctg 211  Q
    |||||||||||    
T  5484984 ctttttctctg 5484994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 39083883 - 39084093
Alignment:
Q  1 tgcaattccttttttacccctatgtttgccattaccatacatcctcatatttcatacagaacacatcaactaagtctctgtctgttcttcttccctccat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  39083883 tgcaattccttttttacccctatgtttgccattaccatacatcctcatatttcatacagaacacatcaactaagtccctgtctgtttttcttccctccat 39083982  T
Q  101 tttcacttctccaagatcatcttcctctccggcgatccagattgcattttttaaggaagatttcgtatgttttgaaggtgacttcgttcatcttcttctc 200  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  39083983 tttcacttctccaagatcatcatcctctccggcgatcaagattgcatttttgaaggaagatttcgtatgttttgaaggtaacttcgttcatcttcttctc 39084082  T
Q  201 ctttttctctg 211  Q
    |||||||||||    
T  39084083 ctttttctctg 39084093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 39921738 - 39921948
Alignment:
Q  1 tgcaattccttttttacccctatgtttgccattaccatacatcctcatatttcatacagaacacatcaactaagtctctgtctgttcttcttccctccat 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  39921738 tgcaattccttttttacccctgtgtttgccattaccatacatcctcatatttcatacagaacacatcaactaagtccctgtctgttcttcttccctccat 39921837  T
Q  101 tttcacttctccaagatcatcttcctctccggcgatccagattgcattttttaaggaagatttcgtatgttttgaaggtgacttcgttcatcttcttctc 200  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  39921838 tttcacttctccaagatcatcatcctctccggcgatcaagattgcatttttgaaggaagatttcgtatgttttgaaggtaacttcgttcatcttcttctc 39921937  T
Q  201 ctttttctctg 211  Q
    |||||||||||    
T  39921938 ctttttctctg 39921948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 43779747 - 43779537
Alignment:
Q  1 tgcaattccttttttacccctatgtttgccattaccatacatcctcatatttcatacagaacacatcaactaagtctctgtctgttcttcttccctccat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  43779747 tgcaattccttttttacccctatgtttgccattaccatacatcctcatatttcatacagaacacatcaactaagtccctgtctgttcttcttccctccat 43779648  T
Q  101 tttcacttctccaagatcatcttcctctccggcgatccagattgcattttttaaggaagatttcgtatgttttgaaggtgacttcgttcatcttcttctc 200  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||    
T  43779647 tttcacttctccaagatcatcatcctctccggcgatcaagattgcatttttgaaggaagatttcgtctgttttgaaggtaacttcgttcatcttcttctc 43779548  T
Q  201 ctttttctctg 211  Q
    |||||||||||    
T  43779547 ctttttctctg 43779537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 44994167 - 44993959
Alignment:
Q  1 tgcaattccttttttacccctatgtttgccattaccatacatcctcatatttcatacagaacacatcaactaagtctctgtctgttcttcttccctccat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  44994167 tgcaattccttttttacccctatgtttgccattaccatacatcctcatatttcatacagaacacatcaactaagtccctgtctgttcttcttccctccat 44994068  T
Q  101 tttcacttctccaagatcatcttcctctccggcgatccagattgcattttttaaggaagatttcgtatgttttgaaggtgacttcgttcatcttcttctc 200  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||    
T  44994067 tttcacttctccaagatcatcatcctctccggcgatcaagattgcatttttgaaggaagatttcgtctgttttgaaggtaacttcgttcatcttcttctc 44993968  T
Q  201 ctttttctc 209  Q
    |||||||||    
T  44993967 ctttttctc 44993959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 3 - 211
Target Start/End: Complemental strand, 42880639 - 42880431
Alignment:
Q  3 caattccttttttacccctatgtttgccattaccatacatcctcatatttcatacagaacacatcaactaagtctctgtctgttcttcttccctccattt 102  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  42880639 caattcattttttacccctatgtttgccattaccatacatcctcatatttcatacagaacacatcaactaagtccctttctgttcttcttccctccattt 42880540  T
Q  103 tcacttctccaagatcatcttcctctccggcgatccagattgcattttttaaggaagatttcgtatgttttgaaggtgacttcgttcatcttcttctcct 202  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  42880539 tcacttctccaagatcatcatcctctccggcgatcaagattgcatttttgaaggaagatttcgtctgttttgaaggtaacttcgttcatcttcttctcct 42880440  T
Q  203 ttttctctg 211  Q
    |||||||||    
T  42880439 ttttctctg 42880431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 32652343 - 32652552
Alignment:
Q  1 tgcaattccttttttacccctatgtttgccattaccatacatcctcatatttcatacagaacacatcaactaagtctctgtctgttcttcttccctccat 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  32652343 tgcaattccttttttacccctatgtttcccattaccatacatcctcacatttcatacagaacacatcaactaagtccctgtctgttcttcttccctccat 32652442  T
Q  101 tttcacttctccaagatcatcttcctctccggcgatccagattgcattttttaaggaagatttcgtatgttttgaaggtgacttcgttcatcttcttctc 200  Q
    ||||||||||||||||||||| ||||||||||||||| || |||||||||| ||||||||||| || |||||||||||| ||||||||||||||||||||    
T  32652443 tttcacttctccaagatcatcatcctctccggcgatcaagcttgcatttttgaaggaagattttgtctgttttgaaggtaacttcgttcatcttcttctc 32652542  T
Q  201 ctttttctct 210  Q
    ||||||||||    
T  32652543 ctttttctct 32652552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 39189626 - 39189734
Alignment:
Q  1 tgcaattccttttttacccctatgtttgccattaccatacatcctcatatttcatacagaacacatcaactaagtctctgtctgttcttcttccctccat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  39189626 tgcaattccttttttacccctatgtttgccattaccatacatcctcatatttcatacagaacacatcaactaagtccctgtctgttcttcttccatccat 39189725  T
Q  101 tttcacttc 109  Q
    |||||||||    
T  39189726 tttcacttc 39189734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 211
Target Start/End: Original strand, 39189730 - 39189760
Alignment:
Q  181 acttcgttcatcttcttctcctttttctctg 211  Q
    |||||||||||||||||||||||||||||||    
T  39189730 acttcgttcatcttcttctcctttttctctg 39189760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 182; Significance: 1e-98; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 45463914 - 45464123
Alignment:
Q  1 tgcaattccttttttacccctatgtttgccattaccatacatcctcatatttcatacagaacacatcaactaagtctctgtctgttcttcttccctccat 100  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  45463914 tgcaattccttttttacccctatgtttgtcattaccatacatcctcatatttcatacagaacacatcaactaagtccctgtctgtttttcttccctccat 45464013  T
Q  101 tttcacttctccaagatcatcttcctctccggcgatccagattgcattttttaaggaagatttcgtatgttttgaaggtgacttcgttcatcttcttctc 200  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  45464014 tttcacttctccaagatcatcatcctctccggcgatcaagattgcatttttgaaggaagatttcgtatgttttgaaggtaacttcgttcatcttcttctc 45464113  T
Q  201 ctttttctct 210  Q
    ||||||||||    
T  45464114 ctttttctct 45464123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 34691239 - 34691449
Alignment:
Q  1 tgcaattccttttttacccctatgtttgccattaccatacatcctcatatttcatacagaacacatcaactaagtctctgtctgttcttcttccctccat 100  Q
    ||||||||| ||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  34691239 tgcaattccatttttacccctatgttttccactaccatacatcctcacatttcatacagaacacatcaactaagtcactgtttgttcttcttccctccat 34691338  T
Q  101 tttcacttctccaagatcatcttcctctccggcgatccagattgcattttttaaggaagatttcgtatgttttgaaggtgacttcgttcatcttcttctc 200  Q
    ||||||||||||||||||||| |||||||||| |||| || ||||||||||||||||||| |||||   |||||||||| ||||||||||||||||||||    
T  34691339 tttcacttctccaagatcatcatcctctccggtgatcaagcttgcattttttaaggaagaattcgttcattttgaaggtaacttcgttcatcttcttctc 34691438  T
Q  201 ctttttctctg 211  Q
    |||||||||||    
T  34691439 ctttttctctg 34691449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 48303529 - 48303334
Alignment:
Q  1 tgcaattccttttttacccctatgtttgccattaccatacatcctcatatttcatacagaacacatcaactaagtctctgtctgttcttcttccctccat 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  48303529 tgcaattccttttttacccctatgtttcccattaccatacatcctcacatttcatacagaacacatcaattaagtccctgtctgttcttcttccctccat 48303430  T
Q  101 tttcacttctccaagatcatcttcctctccggcgatccagattgcattttttaaggaagatttcgtatgttttgaaggtgacttcgttcatcttct 196  Q
    ||||||||||||||||||||| ||||||||||||||| || |||||||||  |||||||||||||| |||||||||||| |||| |||||||||||    
T  48303429 tttcacttctccaagatcatcatcctctccggcgatcaagcttgcattttagaaggaagatttcgtctgttttgaaggtaactttgttcatcttct 48303334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 4322452 - 4322248
Alignment:
Q  1 tgcaattccttttttacccctatgtttgccattaccatacatcctcatatttcatacagaacacatcaactaagtctctgtctgttcttcttccctccat 100  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||| |||||||||||||   |||||||    
T  4322452 tgcaattccttttttacccctatgtttgccattaccatacatgctcacctttcatacagaacacatcaactaagtccctgtctgttcttc---cctccat 4322356  T
Q  101 tttcacttctccaagatcatcttcctctccggcgatccagattgcattttttaaggaagatttcgtatgttttgaaggtgacttcgttcatcttcttctc 200  Q
    ||||||||||||||||||||| ||||||||||| ||| ||||||||||||| |||||||||||||| |||||||||||| ||||||||||||   |||||    
T  4322355 tttcacttctccaagatcatcatcctctccggcaatcaagattgcatttttgaaggaagatttcgtctgttttgaaggtaacttcgttcatc---ttctc 4322259  T
Q  201 ctttttctctg 211  Q
    |||||||||||    
T  4322258 ctttttctctg 4322248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 42620643 - 42620436
Alignment:
Q  1 tgcaattccttttttacccctatgtttgccattaccatacatcctcatatttcatacagaacacatcaactaagtctctgtctgttcttcttccctccat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||    
T  42620643 tgcaattccttttttacccctatgtttgccattaccatacatcctcatatttcatacagaacacatcaactaagtccctatttgttcttcttccctccat 42620544  T
Q  101 tttcacttctccaagatcatcttcctctccggcgatccagattgcattttttaaggaagatttcgtatgttttgaaggtgacttcgttcatcttcttctc 200  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||    
T  42620543 tttcacttctccaagatcatcatcctctccggcgatcaagattgcatttttgaaggaagatttcgtctgttttgaaggtaacttcgttcatcttcttctc 42620444  T
Q  201 ctttttct 208  Q
    ||||||||    
T  42620443 ctttttct 42620436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 175; Significance: 2e-94; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 11022893 - 11022683
Alignment:
Q  1 tgcaattccttttttacccctatgtttgccattaccatacatcctcatatttcatacagaacacatcaactaagtctctgtctgttcttcttccctccat 100  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||    
T  11022893 tgcaattacttttttacccctatgtttgccattaccatacatcctcatatttcatacataacacatcaactaagtccctgtttgttcttcttccctccat 11022794  T
Q  101 tttcacttctccaagatcatcttcctctccggcgatccagattgcattttttaaggaagatttcgtatgttttgaaggtgacttcgttcatcttcttctc 200  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||    
T  11022793 tttcacttctccaagatcatcatcctctccggcgatcaagattgcatttttgaaggaagatttcgtctgttttgaaggtaacttcgttcatcttcttctc 11022694  T
Q  201 ctttttctctg 211  Q
    |||||||||||    
T  11022693 ctttttctctg 11022683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 28246907 - 28247116
Alignment:
Q  1 tgcaattccttttttacccctatgtttgccattaccatacatcctcatatttcatacagaacacatcaactaagtctctgtctgttcttcttccctccat 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  28246907 tgcaattccttttttacccctatgtttaccattaccatacatcctcatatttcatacagaacacatcaactaagtgtctgtctgttcttcttccctccat 28247006  T
Q  101 tttcacttctccaagatcatcttcctctccggcgatccagattgcattttttaaggaagatttcgtatgttttgaaggtgacttcgttcatcttcttctc 200  Q
    |||||||| |||||||||||| ||||||||||||||| ||||||||||||| ||||||||||| || |||||||||||| |||| |||||||||||||||    
T  28247007 tttcacttgtccaagatcatcatcctctccggcgatcaagattgcatttttgaaggaagattttgtttgttttgaaggtaactttgttcatcttcttctc 28247106  T
Q  201 ctttttctct 210  Q
    ||||||||||    
T  28247107 ctttttctct 28247116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 3 - 208
Target Start/End: Original strand, 38148742 - 38148947
Alignment:
Q  3 caattccttttttacccctatgtttgccattaccatacatcctcatatttcatacagaacacatcaactaagtctctgtctgttcttcttccctccattt 102  Q
    ||||| |||||||||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||||  | |||||||||||||||||||||||    
T  38148742 caattacttttttacccctatgtttctcattaccatacatcctcacatttcatacagaacacatcaactaagttccagtctgttcttcttccctccattt 38148841  T
Q  103 tcacttctccaagatcatcttcctctccggcgatccagattgcattttttaaggaagatttcgtatgttttgaaggtgacttcgttcatcttcttctcct 202  Q
    ||||||||||||||||||| |||||||| |||||| || |||||||||| |||||||||||||| || ||| ||||| ||||||||||||||||||||||    
T  38148842 tcacttctccaagatcatcatcctctcccgcgatcaagcttgcatttttgaaggaagatttcgtctggtttaaaggtaacttcgttcatcttcttctcct 38148941  T
Q  203 ttttct 208  Q
    ||||||    
T  38148942 ttttct 38148947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 164; Significance: 8e-88; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 5783608 - 5783807
Alignment:
Q  1 tgcaattccttttttacccctatgtttgccattaccatacatcctcatatttcatacagaacacatcaactaagtctctgtctgttcttcttccctccat 100  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  5783608 tgcaattacttttttacccctatgtttgccattaccatacatcctcatatttcatacagaacacatcaactaagtccctgtttgttcttcttccctccat 5783707  T
Q  101 tttcacttctccaagatcatcttcctctccggcgatccagattgcattttttaaggaagatttcgtatgttttgaaggtgacttcgttcatcttcttctc 200  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||| || ||||||||| ||||||||||||||||||||    
T  5783708 tttcacttctccaagatcatcatcctctccggcgatcaagattgcatttttgaaggaagatttcgtctgctttgaaggtaacttcgttcatcttcttctc 5783807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 41944818 - 41945028
Alignment:
Q  1 tgcaattccttttttacccctatgtttgccattaccatacatcctcatatttcatacagaacacatcaactaagtctctgtctgttcttcttccctccat 100  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||||| |||| ||||||||||||||||||||||| |||||| || |||||||||||||    
T  41944818 tgcaattccttttttacccctatgttttccattaccataaatcctcacattttatacagaacacatcaactaagtccctgtctttttttcttccctccat 41944917  T
Q  101 tttcacttctccaagatcatcttcctctccggcgatccagattgcattttttaaggaagatttcgtatgttttgaaggtgacttcgttcatcttcttctc 200  Q
    ||||||||||||||||||||| | ||||| || |||| || |||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||    
T  41944918 tttcacttctccaagatcatcattctctctggtgatcaagcttgcatttttgaaggaagatttcgtctgttttgaaggtaacttcgttcatcttcttctc 41945017  T
Q  201 ctttttctctg 211  Q
    |||||||||||    
T  41945018 ctttttctctg 41945028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University