View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1946_low_158 (Length: 218)
Name: NF1946_low_158
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_low_158 |
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Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 16102762 - 16102947
Alignment:
| Q |
18 |
agagaggaggtaatttgacatttgattcaccattttagataatagaattatactttgccttatattttctttttctttctgagggttggaacttcagtgt |
117 |
Q |
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| T |
16102762 |
agagaggaggtaatttgacatttgattcaccattttagataatagaattatactttgccttatattttctttttctttctgagggttggaacttcagtgt |
16102861 |
T |
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| Q |
118 |
gattttgacatggtacttatagttcgataaaaagatttgtgcattgtatcaaggcaagttacaataatatttcctatataattaat |
203 |
Q |
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| T |
16102862 |
gattttgacatggtacttatagttcgataaaaagatttgtgcattgtatcaaggcaagttacaataatatttcctatataattaat |
16102947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 19 - 175
Target Start/End: Original strand, 16138431 - 16138591
Alignment:
| Q |
19 |
gagaggaggtaatttgacatttgattcaccattttagataata---gaattatactttgccttatattttctttttctttctgagggttggaacttcagt |
115 |
Q |
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| T |
16138431 |
gagagaagataacttgacatttggctcaccattttagataatactagaaaattactttgccttatattttctttttctttctgtgggatggatcttaagt |
16138530 |
T |
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| Q |
116 |
gtgattttgacatggtacttatagttcgataaaaagattt-gtgcattgtatcaaggcaag |
175 |
Q |
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| T |
16138531 |
gtggttttgacatgatatttatagatcaataaaaagttttagtccattgtatcaaggcaag |
16138591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 110
Target Start/End: Original strand, 16109701 - 16109743
Alignment:
| Q |
68 |
tactttgccttatattttctttttctttctgagggttggaact |
110 |
Q |
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| T |
16109701 |
tactttgccttatattttccttttctttccaagggttggaact |
16109743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 110
Target Start/End: Complemental strand, 16325866 - 16325824
Alignment:
| Q |
68 |
tactttgccttatattttctttttctttctgagggttggaact |
110 |
Q |
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| T |
16325866 |
tactttgccttatattttctttttcttttcaagggttggaact |
16325824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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